| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3249 |
|---|
| Symbol | |
|---|
| ID | 4921326 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 3885907 |
|---|
| End bp | 3887547 |
|---|
| Gene Length | 1641 bp |
|---|
| Protein Length | 546 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640164861 |
|---|
| Product | integral membrane sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001095374 |
|---|
| Protein GI | 127514177 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.632077 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAACC ACACAGCGCA GCTACTCAAG AGTCCCATCG GCAGAAAACT CACCCTGTCG
ATCATCCTCT TTAGTTCCTT GATCACCCTG CTCACCACGG GCTTTCAGCT GATCAACGAC
TATCGTAGCG ACGTCAACCG CATCACCCGC CAATTCGACA GCATAGAGAA GGTCAATCTC
GACGTGCTGG CGGCCAGCAT CTGGGTGATC GACGAGCGGC TGATCAACAC CCAGATAGAT
GGCCTCATCC AACTGCCGGA CATCACCTAT ATTGAGATAG ACGACGACAG TGGCCAGCAT
TGGCAGGCGG GCACGGCCAC GCCGGAGAAC ACCATAGAGC GCAGCTTCAA GTTGGTCTAC
AGCTCGGGCA ACGAGAATAT CGATGTGGGT ACCCTGCTGG TGCAGGCAGA TCTTAGGGTG
GTGTATGAGA AACTGCTGGA TCGCGCCATC GTCATACTGC TCTCCAACGC CATCAAGACC
TTCATCGTGG CCGGCTTCAT CCTCTTCCTG GTCTGGTATC TGGTGACTCG CCACCTGCAT
AAGCTCAGCG ACTATAGCCA AAACATCAAC CTGGAAGGCG AGTTCGAGCC CCTGGTATTC
GTCAAGGACA GCCATAAGAA TGACGAGTTC TGGTTGGTTG CCGAGGCGAT AAATAAGATG
CAGCAGCAAC TCAGACGCTC CTTCGACGAC ATCAAGGCCT CCAAACTGGA GCTACAGGAA
GCCCTGGCGG ATCGCGAGCG CTTACTGGAG CTGGAACGTA GCTACAAGGA TGAGCTGGCC
CGCCAGGTGA AGGAACGCAC CCAGGAGCTG GAACAGTCCC TCTTAGTGCT CAAGCGTGCC
CAGCAGGTGT TGGTCGAGCA GGAGAAGATG GCGGCCCTCG GCGGCCTGGT CTCTGGCGTG
GCCCACGAGA TCAACACCCC CATAGGCATC TGTCTCACCG CCGCCAGCAC TCAGCTGATC
CATATCGAGG AGTTGATCAA ACTGATCCAC AGCGAGAACG CGACCCTGGA GGAGATCAAC
GCCATCCTGG AAGAGTACCA GCAGAGCTGT GAGCTGATCA TCAGCAACAT CACCCGTGCC
AGCAGCCTGA TCCAGAAGTT CAAGACCATA GCGGCCGAGC AGAGCCTGGA AGATAAGCGC
AGCATCAACC TCAAACAGGG GCTAGAGGAG CACCACGAGT CGATGCGATT TATCTACGGC
GATAAGCTTG CCGAGGTGGA GTATCGGGTC GATCCCGACC TCAACATACT CACCAACCTG
AGCCTATTTA AGCAGATAGT CACTAACCTC TTCTCCAACG CCTATGCCCA TGGCTTCAAG
GGCCGCAGTC AGGGGAAAAT CAGGATAGAT GCCGAGGTGG ACGCGGGAAT GCTCAAGATC
TGTATTCAGG ACGATGGACC GGGGATCGAC AGCGAGGCTA CCGGCCATAT CTTCGAGCCC
TTCTATACCA CCACGCGATC TGAAGGCGGC ACGGGCCTAG GCCTCTCCGC CGCCTTCAAC
GCCGTCACCC TGCTCCAAGG CAATATTCGC TATCGCGACG ACGGCGAGCT GGGCGGGGCC
TGTTTCGAGG TGAGCTTCCC GGTGGAGGTA CTGGACAATC AGGCCGTCGA GCTCAACCTC
TCCAACCCAT CGGGCTTTTA A
|
|---|
| Protein sequence | MANHTAQLLK SPIGRKLTLS IILFSSLITL LTTGFQLIND YRSDVNRITR QFDSIEKVNL
DVLAASIWVI DERLINTQID GLIQLPDITY IEIDDDSGQH WQAGTATPEN TIERSFKLVY
SSGNENIDVG TLLVQADLRV VYEKLLDRAI VILLSNAIKT FIVAGFILFL VWYLVTRHLH
KLSDYSQNIN LEGEFEPLVF VKDSHKNDEF WLVAEAINKM QQQLRRSFDD IKASKLELQE
ALADRERLLE LERSYKDELA RQVKERTQEL EQSLLVLKRA QQVLVEQEKM AALGGLVSGV
AHEINTPIGI CLTAASTQLI HIEELIKLIH SENATLEEIN AILEEYQQSC ELIISNITRA
SSLIQKFKTI AAEQSLEDKR SINLKQGLEE HHESMRFIYG DKLAEVEYRV DPDLNILTNL
SLFKQIVTNL FSNAYAHGFK GRSQGKIRID AEVDAGMLKI CIQDDGPGID SEATGHIFEP
FYTTTRSEGG TGLGLSAAFN AVTLLQGNIR YRDDGELGGA CFEVSFPVEV LDNQAVELNL
SNPSGF
|
|---|
| |