| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3224 |
|---|
| Symbol | |
|---|
| ID | 4921548 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 3847321 |
|---|
| End bp | 3848052 |
|---|
| Gene Length | 732 bp |
|---|
| Protein Length | 243 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640164834 |
|---|
| Product | 16S ribosomal RNA methyltransferase RsmE |
|---|
| Protein accession | YP_001095349 |
|---|
| Protein GI | 127514152 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1385] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR00046] RNA methyltransferase, RsmE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.000433897 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAATTC CAAGGATCTA TCAGCTCGGC AACTATGACC TTAACCAGCA GTTGATGCTG
GACGAGGAAG CCGCCGGCCA CGTCGGGCGC GTATTGCGCA TGGGCGCCGG CGAGCAGCTC
GAGCTGTTCA ACGGCGATGG CCACAACTAC CTGACCGAGA TCGTCACCGC CAGCAAGAAA
AATGTCGAGG TGCGGGTCCT ATCCAAGGAG GCGAACGACA ACGAGTCGCC CCTCAACCTG
CATCTGGGTC AGGTGATCTC CCGCGGCGAT CGCATGGACT TCACCCTGCA AAAATCGGTC
GAGCTGGGGG TCAATACTAT TACCCCACTG TTTTCCGAAC GCTGCGGCGT CAAGCTGACC
GGCGAGCGTC TGGAGAAGAA GATCCAGCAG TGGCAGAAGA TAGTGATCAG CGCCTGTGAA
CAGTCTGGCC GCAGCACGGT ACCAGAGGTG AGACCGGCGA TGCAGCTCGA CGACTGGTGC
GGTGAAGCCA CCCAGGCCCT CAAGCTCAAT CTGCACCCCA GGGCCGACCA TGGTATCAAT
GGCCTGGTGA TGGAGACTCC AAGGGTACGT CTGCTGATCG GCCCCGAAGG CGGACTGTCG
CCCCAGGAGA TCGCCATGAC AGAGACCCAT GCCTTCACCG ACGTGCTGCT CGGCCCCCGC
GTATTGCGCA CCGAGACCGC CGCCCTGACG GCCATCAGCG CACTGCAACT TAAGTTTGGC
GACCTGAGCT AA
|
|---|
| Protein sequence | MRIPRIYQLG NYDLNQQLML DEEAAGHVGR VLRMGAGEQL ELFNGDGHNY LTEIVTASKK
NVEVRVLSKE ANDNESPLNL HLGQVISRGD RMDFTLQKSV ELGVNTITPL FSERCGVKLT
GERLEKKIQQ WQKIVISACE QSGRSTVPEV RPAMQLDDWC GEATQALKLN LHPRADHGIN
GLVMETPRVR LLIGPEGGLS PQEIAMTETH AFTDVLLGPR VLRTETAALT AISALQLKFG
DLS
|
|---|
| |