Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_3223 |
Symbol | |
ID | 4921547 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 3846562 |
End bp | 3847317 |
Gene Length | 756 bp |
Protein Length | 251 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640164833 |
Product | deoxyribonuclease I |
Protein accession | YP_001095348 |
Protein GI | 127514151 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG2356] Endonuclease I |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000000396495 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCTAACTA CCTCATTGAG TTTGAGGCCG CTGCTGCGCG GCGCCTTGGC GTTGCTGGCG CTTGGCTTTA CCACGGGCGC CCTCGCCTCC CATCCCACCA GTTTTAATCA GGCCAAGCAG GTCGCACGCA GCATCTACAG CGAGGCGCTA CCGGCCAAGA GCTTCTACTG CGGCTGCGAC ATCAGCATCT CGGGCAAGTT GTGGCAGCCC GACTTCGAGC GCTGCGGCTA TCAGGTGCGT AAACAAGAAA AGCGCGCCAA GCGTATCGAG TGGGAACACA TAGTCCCCGC CTGGGAATTT GGCCACCAGC GCCAGTGCTG GCAAGAGGGC GGTCGCAAAA ACTGCGGCAA GACAGACAAA CAATTTAAGA AGATGGAGAG CGACCTGCAT AACCTGGTAC CCGCCATCGG CGAGGTCAAT GGCGATCGCA GTAACTTCCG TTTCAGCCAG TGGAACGCCA AGGCTGAGCA ATATGGCCAG TGTGCCATGG TGGTCGACTT CAAGGGCAGA AAGGTGGAGC CTCCCAGCCA GACCCGCGGT CAGATAGCCC GCACCTATCT CTATATGCAA CAGGCCTATG GCCTCAAGAT CGCCAAAAGT CAGCTAAAAC TGTTTCAGGC ATGGGATAAA AGCTATCCAG TTGATACTAT TGAGTGCCAG AGAGACGCCG CCATCGCGGC CAAACAGGGC AACCACAACC CCTTTGTCCA GGCCCAGTGC CAAAAACGGA CAGATACCCA GCGTATCGCG GAGTAA
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Protein sequence | MLTTSLSLRP LLRGALALLA LGFTTGALAS HPTSFNQAKQ VARSIYSEAL PAKSFYCGCD ISISGKLWQP DFERCGYQVR KQEKRAKRIE WEHIVPAWEF GHQRQCWQEG GRKNCGKTDK QFKKMESDLH NLVPAIGEVN GDRSNFRFSQ WNAKAEQYGQ CAMVVDFKGR KVEPPSQTRG QIARTYLYMQ QAYGLKIAKS QLKLFQAWDK SYPVDTIECQ RDAAIAAKQG NHNPFVQAQC QKRTDTQRIA E
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