| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3218 |
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| Symbol | |
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| ID | 4921542 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3837701 |
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| End bp | 3842251 |
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| Gene Length | 4551 bp |
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| Protein Length | 1516 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640164828 |
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| Product | carbamoyl-phosphate synthase L chain, ATP-binding |
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| Protein accession | YP_001095343 |
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| Protein GI | 127514146 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG4770] Acetyl/propionyl-CoA carboxylase, alpha subunit |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.1606 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAGCA ACAATCAGCC CACAAACACG ACTCAGGTTC AAACAGCCGA TCCGCTTTTT
CTTCAAGCTG AACATTTGGC ACAGGATTTT TCTCTGTTTC CTAAGCATAG TAAGCAGAGC
CTTTCACAGC AGATCAAGGG TCTGCTCAGC GACGATGAAA TTCAAGCTAA CTTAAAAGAG
TTAGAACAGT TGGATGTTGA CGGCTACGTG GCCAAAGTCA TTCAACCTAC CTTAGACAAG
AGCCGCCCAG GCGCCAAGCG CGTGATTGCG GATCTGAAAG GCAAGTTAAT TGTCGAAAAA
CATATGGGGC CTTTTTATAG TGCCGAGATC GAACTGAATT TTGGATCTCG TACTCGCCGC
ATAGGTTTTA TCGCCCAGGA ACGTAGCACA AGTAATGGTG CCTGGATGCC AGAGCATCAC
CTGGCGGCCT GCACGGCCAT TCGTCATTTT GCCGAGCTTT CAATGCCTAT CGTTTACCTC
ATCGACACTC CGGGTGCCGA TGCGGGGGAG ATAGCCAACA GCCAAAACCA GGCGCACACC
ATCTCTAAGG CGATTGCCGA GAGTGCTAAC GTCGACGTAC CTACCGTAGG TATCGTTATC
GGTGCCGGTT ACTCTGGTGG TGCTATTCCA CTGGCTGCGG CTAACATTCT ATTGTCGCTA
CGTGACGGTA TCTTCAACAC CATCCAGCCA CAGGGTCTAC AGAGCATTGC GCGTAAGTAC
AACCTCTCTT GGCAGGAGTG TGCTAAGTCG GTAGGTGTGT CACCAGAGGA GCTGTACACC
TCAGGTTGTA TCGATGGCAT CATCGACTTC TCGCCATCTG ACAAGGATGA GCGTCAGCAC
AACCTACGCC GCGCTATCAT CAGCAGCATC GAGGCCGTTG AGCATGCGGC GGTACAGTTT
GTACGCGAAT CTAAGGATCT GCGTGAGCAC TACGACCGCA GTCTTCACCG TTTCCTTGAG
CCTTCTAAGA ACCTCGAAGC GCTTGAGCAC CACGCCGAAC TGTCGGTGGC TAACAACCCC
ACCATGCACC TCAACCTGTT TGGTAGCTCA TACCGTTACC TGCGTTACCT GACGCTGCGT
AGCCGTATCC ATTCGATCTC ACAGGAGCAA TATGGTCGCC TGTCTAAGGT GAGTGTGCCT
GAGGGTGATC TGTTGGCGCG TATTCAGCAG GAACAGGACA AGGTGTTCCA GTCTTGGCTG
TCGAGCCCAG ATAAACTGGT ATACGACGAA GAGCTGAACA AGCTGTGGAG CAACTTCACC
GCCAAGCGTG ACGAAGTCTC TACAGAGCGT AACATGCTGA CTCGTCTCAT CCTGGGTGAG
CCGAAGCAAA ACTATAAGAA GGCCCGTAAG GCGCTGTTGT TCAACATCGG CTGGTCGCTG
TACCACAGAT GGAAGAGCAA CGCCGAGAAC AACTTCAAGG GGCTAATCCA TTATCTAGAG
AGCCTTCCAG ACGAGGTGAC TCAGGCAGAT TGGCCTGAGC TGAACCAGCT GACGGTTCTG
GATGTGATCG TGCACGAAGA GCTGCGCGAA GACTTCATCT GGCAATGTTA TAACATCCTG
ATCTTCAACG CGCTGTACGA CAACGTCGTG GGTAACCTTG CCTCTATCGC GAAAGAAGCC
ATGATGTCTA AGAGCCTGTC GCGCGCCTCG GTTGACGGCC TGCTACATGA CTCTATTGAC
CGCGCTATCT CTAAGCAAGA TACCGCTAAC GATAAGAACA AGTTCTACAA GTGGCTGAAG
TACTTCATGT CTCAGTCTAA CCGCGCCGAT CTGCTGACCA AGACTGAGCA GTGGAAGAGT
GTCGGTTTCC CTCAGCTTAA CGACTCTCTG TTCGTTATCC TGACCTACTT CTTCGAGCGT
CTGCTGCCTG AATACTTCGC CAGCGAAGAG GAGAGCAGCG AGTACACGGG TGCCATCAAC
CCAGTGCGTA TCGGTCGTCG TAAAGACTTC TGGAACCGTC TGACCATGGG TTATCAGGAT
CTTCTGATCC AGAAGGTACT GCGTGACGAG AAGCGCGCCG GTAAGATGAG CTGGGAAAAT
GTGATTGCCA AGTTCTTCAC CGAGTTTGAA GAGCTAAACG GCGACAAGAT GTCGGCTAAC
CTGCTGAACT TCCCAGGCTT CCGTCTCTCT ATCGAAGACG CGCTAGACAA GGGTATCCGT
CCTTGCGGCC TGATCACAGG TACTGCGGAC TTCGAGCACC ATGGACAAAC CATGCGCGTT
GGTGTGGCCG TGTCTAACAC CGCCTTCCAG GCTGGTGCCT TCGATATGGC TTCTGCCGAG
AAGTTCTCAG CGCTCTTGAT CGAGTGTGCC AAGCGTAAGC TGCCGGTGAT CTGCTTTATC
AGCTCAGGCG GTATGCAGAC CAAAGAAGGT GCTGCGGCGC TCTTCTCTAT GGCGGTAGTG
AACGACCGTA TTACCCGTTT CGTTCGTGAT AACGAATTGC CGGTATTGAT GTTTGGTTTC
GGTGACTGTA CCGGTGGTGC ACAGGCGAGC TTCGTGACTC ACCCGTTAGT ACAGACTTAC
TACTTCTCTG GCACCAACAT GCCGTTCGCC GGTCAGATGG TTGTCCCTGC GTATCTGCCG
TCTACCTCGA CCCTGTCGAA CTATCTGTCT AAGGTACCTG GCGCCATGAA CGCCCTGGTC
ACCAACCCAT TTAGCGACAC TATCGACGAT CAGCTCAGCA GTATCGATCC GCTGATGCCT
AAGCCAACGG CTAAGGTAGT GGATGTGATT GGTAACGCCA TTTCGACCCT GGTGCCTGAG
ATGTTGATCA CCGAGGAAGA GCTGGTACAG GACGATCCAC GTCAGCTGAT GAAGCCGATC
GATAAGGTAC TGGTGCACGC CCGTGGCTGT ACTGCGGTGA AACTGATCCG CAAGGCACAC
GACAACAACA TCAAGGTGGT ACTGGTGGCG TCAGATCCTG ACATGACCTC AGTACCGGCC
GACATGCTGA ACGAAAACGA CAAGCTGGTC TGTATCGGTG GTAACACCTC AGACGAGAGT
TACCTAAACG CCTACTCGGT ATTGAAGGTT GCCGAATATG AGCAAGTCGA CGCGCTGCAC
CCTGGTATCG GCTTCCTGTC GGAAAGCCCG CAGTTTGCGG CCCTGTGTGT GAACAACGGC
GTTAACTTCG TCGGTCCAAG TGTGCACTCA ATGACGACTA TGGGTAACAA GTCGAACGCG
ATTAAGACCT CGCAGTCGCA AAATGTGCCA GTAGTACCTG GCAGCCACGG TATTCTGACC
AATGCCGAGC AGGCGGTGAA CGTGGCCAAC GAAATCGGCT ACCCTGTGCT GCTTAAGGCG
GTACAAGGTG GTGGCGGTAA GGGTATCCAG GTCGTTCAAC GTCCAGAAGA TATGATCTCT
CTGTTCCAGA AGACCTCTAC CGAAGCGGCT GCGGCCTTCG GTAACGGCGA CCTCTACCTA
GAGAAGTATG TGACCTCACT GCGTCACATC GAAGTGCAGC TGCTGCGTGA CAAGTTTGGC
AACACCAAGG TACTGGGTTT GCGTGACTGT TCGGTACAGC GTAACAACCA GAAGGTGATC
GAAGAGTCTG GTTCTACCAT GCTGCCAGAA GAGCTGAAGC AGCAGGTGAT GGAATACACC
CGCGCCCTCG GTGACGCCAC AGACTACATG GGCGCAGGTA CCGTAGAGTT CATCTACAAC
CTGGATGCCA ACGAAGTCTA CTTCATGGAG ATGAACACGC GTCTGCAGGT TGAACACCCT
GTGACCGAGG CGACCTCAGG TATCGATATC GTGAGCGCAG GCTTCGACAT CGCCGCCGGT
CGTTCAATAG AAGATCTTGA GCCACAAGAG ATCGGCTACG CCATCGAGGT TCGTGTGACT
GCCGAGAAGG CCGCACTGGA CAGCAACGGC GTACTGCAAC TGCTGCCACA TCCAGGCATG
ATCACCGAGT GTGTGATCCC AGAGCGTGAC GATATCGAGA TCATCTCTAT CGCCGGTGAA
GGCAAAGAGG TTTCACCATA CTACGACAGC CTGATCGCTC AGATCATCTG CCGTGGTGAG
AGCCGTGAGG ATGTGATCAA CAAGCTGCAT GACTACCTGG CAAACCAAGT AGTGATCAAG
GGCATCGCGA CCAACATCCC ACTGCTGACT CGTATCCTGA AAGATGGCAC CTTCAACGAA
GGCGTATACG ACACCAACTA CCTGCCACGC TTCATGGCTG AGCTGGATAT TCCAGCGCTG
ATCGCCGAGA TGGAAGCCGC CGCAGAGACT GTAGGCGTCG ATACCGAGTC GCTGCGTGTG
GGTGAGAGTA ACGAGCTTAA GGTTCTGGCT CAGGGTGCAG GTATCTTCTA TACCTCTCCA
GCGCCGGGTG AAGCCGACTT CGTTAAGGAA GGCGACATAG TGACTGTGGA TCAGACACTG
GCGTTGACCG AAGCGATGAA GATGTTCTCT CAGGTGACAC TGGCTGGCTT CAACCGTCAG
GGTGCCGTGC TCTATCCAGA GGATAAGCAG TACCGCATCG AGCGTATCCT GAACAGCAAT
GGTCAGCAGG TTTCACAGGG CGAGCTACTC TTCGTGGTCT CTCCTGTCTA A
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| Protein sequence | MTSNNQPTNT TQVQTADPLF LQAEHLAQDF SLFPKHSKQS LSQQIKGLLS DDEIQANLKE
LEQLDVDGYV AKVIQPTLDK SRPGAKRVIA DLKGKLIVEK HMGPFYSAEI ELNFGSRTRR
IGFIAQERST SNGAWMPEHH LAACTAIRHF AELSMPIVYL IDTPGADAGE IANSQNQAHT
ISKAIAESAN VDVPTVGIVI GAGYSGGAIP LAAANILLSL RDGIFNTIQP QGLQSIARKY
NLSWQECAKS VGVSPEELYT SGCIDGIIDF SPSDKDERQH NLRRAIISSI EAVEHAAVQF
VRESKDLREH YDRSLHRFLE PSKNLEALEH HAELSVANNP TMHLNLFGSS YRYLRYLTLR
SRIHSISQEQ YGRLSKVSVP EGDLLARIQQ EQDKVFQSWL SSPDKLVYDE ELNKLWSNFT
AKRDEVSTER NMLTRLILGE PKQNYKKARK ALLFNIGWSL YHRWKSNAEN NFKGLIHYLE
SLPDEVTQAD WPELNQLTVL DVIVHEELRE DFIWQCYNIL IFNALYDNVV GNLASIAKEA
MMSKSLSRAS VDGLLHDSID RAISKQDTAN DKNKFYKWLK YFMSQSNRAD LLTKTEQWKS
VGFPQLNDSL FVILTYFFER LLPEYFASEE ESSEYTGAIN PVRIGRRKDF WNRLTMGYQD
LLIQKVLRDE KRAGKMSWEN VIAKFFTEFE ELNGDKMSAN LLNFPGFRLS IEDALDKGIR
PCGLITGTAD FEHHGQTMRV GVAVSNTAFQ AGAFDMASAE KFSALLIECA KRKLPVICFI
SSGGMQTKEG AAALFSMAVV NDRITRFVRD NELPVLMFGF GDCTGGAQAS FVTHPLVQTY
YFSGTNMPFA GQMVVPAYLP STSTLSNYLS KVPGAMNALV TNPFSDTIDD QLSSIDPLMP
KPTAKVVDVI GNAISTLVPE MLITEEELVQ DDPRQLMKPI DKVLVHARGC TAVKLIRKAH
DNNIKVVLVA SDPDMTSVPA DMLNENDKLV CIGGNTSDES YLNAYSVLKV AEYEQVDALH
PGIGFLSESP QFAALCVNNG VNFVGPSVHS MTTMGNKSNA IKTSQSQNVP VVPGSHGILT
NAEQAVNVAN EIGYPVLLKA VQGGGGKGIQ VVQRPEDMIS LFQKTSTEAA AAFGNGDLYL
EKYVTSLRHI EVQLLRDKFG NTKVLGLRDC SVQRNNQKVI EESGSTMLPE ELKQQVMEYT
RALGDATDYM GAGTVEFIYN LDANEVYFME MNTRLQVEHP VTEATSGIDI VSAGFDIAAG
RSIEDLEPQE IGYAIEVRVT AEKAALDSNG VLQLLPHPGM ITECVIPERD DIEIISIAGE
GKEVSPYYDS LIAQIICRGE SREDVINKLH DYLANQVVIK GIATNIPLLT RILKDGTFNE
GVYDTNYLPR FMAELDIPAL IAEMEAAAET VGVDTESLRV GESNELKVLA QGAGIFYTSP
APGEADFVKE GDIVTVDQTL ALTEAMKMFS QVTLAGFNRQ GAVLYPEDKQ YRIERILNSN
GQQVSQGELL FVVSPV
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