| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3208 |
|---|
| Symbol | napH |
|---|
| ID | 4921566 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 3826878 |
|---|
| End bp | 3827777 |
|---|
| Gene Length | 900 bp |
|---|
| Protein Length | 299 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640164818 |
|---|
| Product | quinol dehydrogenase membrane component |
|---|
| Protein accession | YP_001095333 |
|---|
| Protein GI | 127514136 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0348] Polyferredoxin |
|---|
| TIGRFAM ID | [TIGR02163] ferredoxin-type protein, NapH/MauN family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAAACG GCATGAGTAA TACGAAGATG AAGACGCCAG GTGCGGCTCA GACACGTTTC
GCTCAGGCGG CGATAGACGA ACTGGGCTGG TGGCGCGCCC ACAAGTTCCT GTTCCTGCGC
CGTGCCAGTC AGCTGTGTGT GCTGCTCACC TTTGCCATCG GCCCCTGGAT GGGGCTCTGG
GTACTCAAAG GTAATCTCTC CTCCAGCGAG CTGCTGGGCA CTATCCCGCT GTCAGATCCC
CTTGTGACCC TGCAAGTGCT GATGACGGGA CACCTACCCG AGACCGCGCT GCTTGTCGGC
GCGCTGCTGA TCGCCCTCTT CTACCTGCTT GCGGGTGGAC GAGTGTTCTG CAGCTGGGTC
TGCCCGGTCA ACCTGGTCAC CGATGCTGCG AGCTGGCTAA GGCGCAAGCT ACGTCTGCCC
CGCACCGCCG AGATGCCTAG AAACCTGCGC TACTACCTGC TGGCCCTGGT GCTGTTACTG
CCCCTGGTCA CAGGGATCAC TGTGTGGGAA TGGGTCAACC CAGTGCCTAT CCTCTATCGC
GCCCTACTGT TTGGCGCCGG TAGCGGCCTG TGGATACTGG CGATGATCTT CTTGCTGGAT
CTCTTCATCA GTGAACGGGC CTGGTGTGGT CACCTGTGTC CCACAGGCGC CCTGTTTGCC
CTGCTGGGCA AAGCGAGCCC GGTCAAGGTA TCTGCGGTCA ATGCCAGTGC ATGCGACAAC
TGCATGGATT GTTTCGAGGT CTGCCCAGAG CGGCAGGTGT TGAAGCCCGC CCTCAAGGGC
GACAATCCCA TGATAGTCGA CAGCGATTGC ACCCAGTGCG GCCGATGTAT CGATGTTTGC
GCCCAACGCG TTTTCCAGTA TCAAAATCGA ATTGCCCTAA AGGCGGAGAA CAACCAATGA
|
|---|
| Protein sequence | MTNGMSNTKM KTPGAAQTRF AQAAIDELGW WRAHKFLFLR RASQLCVLLT FAIGPWMGLW
VLKGNLSSSE LLGTIPLSDP LVTLQVLMTG HLPETALLVG ALLIALFYLL AGGRVFCSWV
CPVNLVTDAA SWLRRKLRLP RTAEMPRNLR YYLLALVLLL PLVTGITVWE WVNPVPILYR
ALLFGAGSGL WILAMIFLLD LFISERAWCG HLCPTGALFA LLGKASPVKV SAVNASACDN
CMDCFEVCPE RQVLKPALKG DNPMIVDSDC TQCGRCIDVC AQRVFQYQNR IALKAENNQ
|
|---|
| |