| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3198 |
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| Symbol | |
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| ID | 4921588 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3809680 |
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| End bp | 3810648 |
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| Gene Length | 969 bp |
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| Protein Length | 322 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640164808 |
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| Product | glycine cleavage T protein (aminomethyl transferase) |
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| Protein accession | YP_001095323 |
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| Protein GI | 127514126 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0354] Predicted aminomethyltransferase related to GcvT |
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| TIGRFAM ID | [TIGR03317] folate-binding protein YgfZ |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCTTA CCGTTTCTCA ACCTCAGTGG CCCCTCAATG AGGCGCAACC CGCCATCGTT
TTCAGCCAAC TCTCCCATCT CGGCCTTATC TCTGTAACCG GCGAGCAGGC ACGGACTTTC
ATCCACGGTC AGGTGACCAC AGATATCACC TCCCTGGAAG CAGATCAGTG GCGCTGGGGC
GCCCACTGCG ATCCTAAGGG CAAGATGCTA GCAAGCTTCA GAACCTTCGC CCATCAAGAT
GCCCTGCTGA TGATGATGCC AAGAGAGACC CTGGCGCTCG ACCTGCCGCA GCTACAGAAA
TATGCCGTGT TCAGCAAGGC AGAACTGGTC GATGCCAGCG ACGACTGGTG TTTATTTGGC
GTCAGCGGCG AGCAGGCCCT TGCCTGGATA GCCCAGGCCT TCGGCGAGAT CGCAGCCGAG
CTCACCGAGA TCCCAGGCGG CGTCATCCTA AGAGACGGCG AACGCTACAT CATTGCCGTC
AAGTGCGATA CGCAGGCTGA GCTGCTGGCC AAGATTGACC AGCCCATCTA TGATTTCAGC
GCCTGGCAGG CGATCGAGAT CGCCGCCGGT CTGCCCAACC TCTATGCCCG TCATCAGAGC
CAATTTGTGC CGCAGATGTG CAACGTGCAG GCGGTCGATG GCATCAGCTT CACCAAGGGC
TGCTACATGG GTCAGGAGAC CGTGGCCCGC ATGAAGTATC GCGGCGGCAA CAAGCGCGCC
CTCTATATCG TCCAGGGCTC CGCCAGTGTG ACGATCGATG ACGACAGCCA GCTCGAGATG
AAACTGGAAG ATGATGAAGG TTATCGCCGC GCCGGCACCA TTTTGGAAGC CGTGCAGCGT
GACGGTCAGC TGCTGCTGAG CGCCGTGTTG CCCAACGATA CGCCGTTAAC GGCTCAGCTG
AGAGTGGCGG GCGATGAGGC ATCAGTTCTC ACCCTAGCAC CACTGCCCTA CTCCCTGGAT
GAAGAGTAA
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| Protein sequence | MTLTVSQPQW PLNEAQPAIV FSQLSHLGLI SVTGEQARTF IHGQVTTDIT SLEADQWRWG
AHCDPKGKML ASFRTFAHQD ALLMMMPRET LALDLPQLQK YAVFSKAELV DASDDWCLFG
VSGEQALAWI AQAFGEIAAE LTEIPGGVIL RDGERYIIAV KCDTQAELLA KIDQPIYDFS
AWQAIEIAAG LPNLYARHQS QFVPQMCNVQ AVDGISFTKG CYMGQETVAR MKYRGGNKRA
LYIVQGSASV TIDDDSQLEM KLEDDEGYRR AGTILEAVQR DGQLLLSAVL PNDTPLTAQL
RVAGDEASVL TLAPLPYSLD EE
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