Gene Shew_3188 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_3188 
Symbol 
ID4921578 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp3796157 
End bp3797344 
Gene Length1188 bp 
Protein Length395 aa 
Translation table11 
GC content56% 
IMG OID640164798 
Productaromatic amino acid permease 
Protein accessionYP_001095313 
Protein GI127514116 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0814] Amino acid permeases 
TIGRFAM ID[TIGR00837] aromatic amino acid transport protein 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.497864 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTTGGCT CTATTGCCAT CGTTGCGGGG ACCGCAATTG GGGGAGGCAT GTTGGCCTTG 
CCTCTGGCAA CTGCTTCACT GGGGACGATT CCAGCCTTAC TACTATTAGT GGCGATCTGG
GGGGTATCTA TCTATACCTC TCTGTTGATG TTAGAGATTA ACTTACGTGC CGGTGTGGGG
CTGAACGTCC ACGCCATCAC GGGCAAGACC TTAGGCAAGG TCGGCCAGCT GATCCAGGGC
GGCTCCTTCT TGAGTCTGCT GTTTGCCCTG ACCATGGTCT ATCTGATGGG CGGTTCCTCC
CTGCTGGAGT CTCGCTTCGA ACCGCTGGGG ATAAAGGTGA ACCACGAGGC GGCGGTACTC
ATCTTTACCT TGGTGTTCGG TGGCTTCATC GCCATCGGCG TCTCCTGGAT CGACAAGGTC
TCACGTGTGC TCTTTAGCGC CATGGTAGCC CTGTTTGTCA TCGTAGTGCT CTTCCTGCTA
CCCGAAGTCA GCCCAAGCTA TATCCTGCGT GAATCGGCCA CCGAATTGGT GTCTAAGGGC
GAGCTGGGTA ACCTCTGGCT GGCGGCTATT CCTGTGGTGT TTACCTCTTT CGGTTTCCAC
GTCTGTATCG CAACGATTGT GCGCTACCTG GATGGCGATG CCATGTCGCT GCGTAAGGTA
CTCATGATTG GCTCGACCAT CCCCTTGGTG TGCTACATCC TCTGGTTGAT GGTGACCCTG
GGCACTGTGG GCGGCGCGAC CGTGTACGGT TTCGAGGGCT CTCTGCCTAA GCTGGTGTCG
GCGCTGCAGG GTATCGCTCA CTCAGACATT TTACGTCAAT GTATCGATTT GTTTGCAAAC
CTGGCGCTGA TAACCTCTTT CCTCGGGGTG ACCATGAGCC TGTTCGACTA TATTGCCGAG
CTGACCCGCG CCAGAGACAA CCTGCTGGGT CGCCTGCAGA CCTGGTTGAT AACCTTTGTG
CCGCCACTGC TGTGCGCCCT CTACTATCCT GATGGTTTCA TTAAGGTATT AGGTTTCGCG
GCTCTGCCGT TGGTGGTGAT GATCATCTTC CTGCCTATCG CCATGGCGCT GGGACAGCGT
AAGCAAAATC TGGGCGGTTA CCAGGTGAGT GGTGGTCAGT TTGCATTAGC CGCGTCGGCG
CTGGTAGGTC TGGTGATTAT CGCCGCCCAG CTCTGGGTTG CGCTGTAA
 
Protein sequence
MLGSIAIVAG TAIGGGMLAL PLATASLGTI PALLLLVAIW GVSIYTSLLM LEINLRAGVG 
LNVHAITGKT LGKVGQLIQG GSFLSLLFAL TMVYLMGGSS LLESRFEPLG IKVNHEAAVL
IFTLVFGGFI AIGVSWIDKV SRVLFSAMVA LFVIVVLFLL PEVSPSYILR ESATELVSKG
ELGNLWLAAI PVVFTSFGFH VCIATIVRYL DGDAMSLRKV LMIGSTIPLV CYILWLMVTL
GTVGGATVYG FEGSLPKLVS ALQGIAHSDI LRQCIDLFAN LALITSFLGV TMSLFDYIAE
LTRARDNLLG RLQTWLITFV PPLLCALYYP DGFIKVLGFA ALPLVVMIIF LPIAMALGQR
KQNLGGYQVS GGQFALAASA LVGLVIIAAQ LWVAL