| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3176 |
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| Symbol | |
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| ID | 4921671 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3781321 |
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| End bp | 3782049 |
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| Gene Length | 729 bp |
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| Protein Length | 242 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640164786 |
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| Product | regulatory protein GntR, HTH |
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| Protein accession | YP_001095301 |
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| Protein GI | 127514104 |
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| COG category | [K] Transcription |
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| COG ID | [COG2186] Transcriptional regulators |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.730979 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGAATTTA TCTTGAACAC TTTTCAGCCA ATCAAACAGG TCAAGGCCTC TGAAGAGGTG
TCTAACCAGC TCAAGCAAGC CATTTTCCAG GGCAAGTTTA GTGTCGGCGA TAAATTACCC
TCAGAGCGGG AACTGATCGA AAGTTTCCAG GTGAGCCGCA CCGTGGTGCG CGAAGCGATC
AAGAGTCTTG AAGCGAAAGA TCTGGTAGAG ATCAAACAGG GAGCCACCGG CGGCGCCTTT
GTAAAAGCCC TCACCTTCGA GCGCCTGAGC AACGACTGTA AGGATCTCTT CTTTCTCGGC
CAGATGTCGT TTAACGAGAT CTGCCAGGCA AGATTGGCCA TCGAGCCCAT AGTGGCCGGC
CTCGCCGCAA AATACTGTAC CCAAGAGCAG GCCACTCAGC TGCGTGAAGC CAATGCCCAT
GAGAGCGACA GCCTGGCCTA CCCAGAAACG GTATTTCTGC GTAGCCGAGT CCATTATCTG
TTGGCCGACA TGTGCCAGAA CCGATTCCTG ATGGCGATAG ACAAGTCACT GATCCAACTG
GTTGCCTCTA TCGTCCAGCA ATTTCAGCCC GATACCGACA AGATACACCC GGCGGGCCTG
CATAACTCTA TCGTAGATGC CGTCATCGCC GGCGATGAAA AAGCGGCCGA AGAGGCGATG
CGTAGCCATC TCACCGAATT TATCGGCCTG TTAGCGGGAA TCGAAGAGGA ATACCGCAAC
AGCCGCTAG
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| Protein sequence | MEFILNTFQP IKQVKASEEV SNQLKQAIFQ GKFSVGDKLP SERELIESFQ VSRTVVREAI
KSLEAKDLVE IKQGATGGAF VKALTFERLS NDCKDLFFLG QMSFNEICQA RLAIEPIVAG
LAAKYCTQEQ ATQLREANAH ESDSLAYPET VFLRSRVHYL LADMCQNRFL MAIDKSLIQL
VASIVQQFQP DTDKIHPAGL HNSIVDAVIA GDEKAAEEAM RSHLTEFIGL LAGIEEEYRN
SR
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