| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3175 |
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| Symbol | |
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| ID | 4921670 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3779695 |
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| End bp | 3780957 |
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| Gene Length | 1263 bp |
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| Protein Length | 420 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640164785 |
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| Product | outer membrane porin |
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| Protein accession | YP_001095300 |
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| Protein GI | 127514103 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.442937 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGGACT TATTCGAGAG ACAGGGAAAT AAGATGATGA AAAAAAACTA TTTATCGCTA
TTGGTGATGT CAGCTATTGC GCTACCGGCT GCCGCCGACA CCACTCTAGA TCAGATGTTC
AGTCAAGGCA GCTTGCGGGG CGAGTTGAGA CTCTTCGACT TTACCCGTGA TTTCGACGGA
GACACCAATA CCAAGCATGA CACCTCGCTG GGTGGACTCT TCTATTACAA CACCGCCGCC
GTCAATGGCA TCAGCATAGG CACCAGCTTT GCTTCGGCCA ACTCCTTGTG GACCAATGAC
TCGGATAGCT TCTATGGCCT GGTGGGACCG AATCACGAGA ACGTAAACCG CCTGCAGGAG
TATTTTATCC AGGGCGAGTG GTGGAACACT AAGTTTAAAT ATGGTGCGCA AGAGCTGCGT
ACCCCTATGA TGAACCCCCA TGATATCCGC GCCATTCCCC GCACCTTCCG TGGCTTTACC
GCCTATAACA ATAGCGTCGA TAATCTCACC CTCTCGGCCC TCTATATCAC TGACTCTATG
GGGTGGTTCG ACAATCAATT TGTGACAGTG GCAGAGGCTG TCGCCAGCGA GGTGAGACGC
ACGACAGGTC GGGTCGTAGA AGTCGCCGAT AACCCTGTTT ATGCCCTGGG CGGTAAATAC
AAGTTGCAGT TCGATGGCGT GAAAGGGGCC GCCGATCTCT GGCACTACCG CATGGAAGAT
GTCTTCAATC AGACCTTTGT GAAGCTGAAT CTGTCGATGA ATGTCGGGGA TGCCAACCTC
TATGTCACTC CCTCTTATCT GACCCAGCAG TCCTCTGGCA AGGAGACCGC CGGTGAGTTG
GATACCTATC AGTATGGCGC GCACCTCGGC GTGAAATATG CCGGATTAAA CCTCACCTAT
ATGTATGCCA AGACAGGGGA CGATACCGTG TTGACCCCTT GGGGTGATGA CAAGGTGGTG
ATCCAGCAGG TTAATCAATC GGCCCGTGCC AACGAGACGG TCAATGCCCT GAGAGTGGCC
TACGATTTCG ATAAGTTGGG GGCAAAAGGG CTGAGCGCCT ACGTCTTCTA TGGGGATTTC
GATGTGCCTG AGACCTCGGG CAGTGACTTT CGCGAAACCA ACTTCTCGGT TAGCTATTCA
CTGGATAGTT TGATGAAAGG CTTAAGTGTG CGGGCAAGAC ACGCCATTGT GGATTATGAC
AATGGAGAGG ATCTGACCGA TACCCGTTTC TATATCAAGT ATAAGTTTAC CCTGGGTATT
TAA
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| Protein sequence | MSDLFERQGN KMMKKNYLSL LVMSAIALPA AADTTLDQMF SQGSLRGELR LFDFTRDFDG
DTNTKHDTSL GGLFYYNTAA VNGISIGTSF ASANSLWTND SDSFYGLVGP NHENVNRLQE
YFIQGEWWNT KFKYGAQELR TPMMNPHDIR AIPRTFRGFT AYNNSVDNLT LSALYITDSM
GWFDNQFVTV AEAVASEVRR TTGRVVEVAD NPVYALGGKY KLQFDGVKGA ADLWHYRMED
VFNQTFVKLN LSMNVGDANL YVTPSYLTQQ SSGKETAGEL DTYQYGAHLG VKYAGLNLTY
MYAKTGDDTV LTPWGDDKVV IQQVNQSARA NETVNALRVA YDFDKLGAKG LSAYVFYGDF
DVPETSGSDF RETNFSVSYS LDSLMKGLSV RARHAIVDYD NGEDLTDTRF YIKYKFTLGI
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