| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3131 |
|---|
| Symbol | |
|---|
| ID | 4921998 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 3722971 |
|---|
| End bp | 3724413 |
|---|
| Gene Length | 1443 bp |
|---|
| Protein Length | 480 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640164741 |
|---|
| Product | poly(A) polymerase |
|---|
| Protein accession | YP_001095256 |
|---|
| Protein GI | 127514059 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0617] tRNA nucleotidyltransferase/poly(A) polymerase |
|---|
| TIGRFAM ID | [TIGR01942] poly(A) polymerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00000115831 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0863023 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAGTTATG ATAGCGGCCT AATTTTAACC CTGACTCAAG ATCCAAGTTC GAGGTGTCCT
ATTTTTCGCC GTATTAGTCA ATTCTGTAAG CAGCTTTTTG AAGACAATCA AAACACCACA
GAAACCACAC CAGCGGGACT AAGCCTAGAG ATAGTTGCAC GTAAACATCA TGCAATCTCT
CGCCAGCACA TTAGCGAAAA CGCTATTAAG GTACTCTATC GTCTGCACAA ATCTGGCTTT
AAGGCCTATT TGGTGGGCGG CGGCGTGCGC GACATCCTCC TAGGACTCGA GCCCAAGGAT
TTCGACGTGG TCACCAATGC CACGCCGGAA GAGATCAAAA AGCTATTTCG TAACTGCCGC
CTGGTAGGGC GCAGATTCCG TCTGGCCCAT ATCGTCTTCG GCCGCGACGT CATCGAAGTC
GCCACCCTGA GGGGACACCA TGTAGACAGC GGCGAGAAGA TCTCTAAAGT CAACGCCGAG
GGGCGCCTGC TGCGCGACAA CGTCTACGGC ACCATAGATG AAGACGCCGA GCGCCGCGAC
TTTACCGTCA ACGCCCTCTA CTACGACATC AGCGACTTTT CCATCCACAG CTATGGTGGC
GGCCTGCAGG ATCTCGAGTC TCGCACCCTG CGTCTGATCG GCGACCCGCA GAAACGCTAC
CGCGAAGATC CCGTGCGCAT GCTGCGCGCC GTGCGCTTCG CCACTAAGCT GGGGATGAGC
ATAGACAAGG CCGCGGCGCA GCCGATCTCC GAGCTGGCCC CCCTGCTAAA AGATATTCCA
GCCGCCCGTA TGTATGAAGA GGTGCTTAAG CTCTTCTTCG CCGGTCAGGC CCAGAACAAC
TACGTCATGA TGCGCGACTT TGGCCTGTTC GCCCCTCTCT TTCCCCTGGT GGATAACCTG
CTGGAGGAAG ATCCTAAGGG ACCGAGCCAC AAGATGGTCA AGGCGATCAT GCGCAACACT
GACGAGCGGG TTGAACAAGA TAAGTCGGTC ACTCCGGCCT TCTTCTACGC CGCCATGCTC
TGGTACCCCC TCAGTCAGCG TGCCGATGAT ATCGCCCTGG AGAGTGGCCT GAGCCAATAT
GACGCCTTCT ACGCCGCCAT GGGTGATGTG ATGGAGCAGC AATGCCGCAC CATCAGTATT
CCCCGTCGCT TCAGCACCCC GGCCAAGGAT ATCTGGCAAC TGCAACTAAG GTTCGAACGC
AACCAGGGCA CACGTGCCTT CAAGTTCATC GAACATCCTA AGTTCCGCGC CGCCTATGAT
CTGCTGCTGC TGAGGGCCGA AGCCGAGGGT GGTAACCTGG CCAAGACGGC CGCCTGGTGG
AAGAGCTTCG TCGAAGGTAG CGAAGAGCAG CGCAGCGTCA TCGCCCGCAG CACCAACAAG
GGTAGCCGCA GCCGCAACAA TCGCCGTCGT CGCAGCCCGA AGAAGACACC TAAAGCCGAA
TAA
|
|---|
| Protein sequence | MSYDSGLILT LTQDPSSRCP IFRRISQFCK QLFEDNQNTT ETTPAGLSLE IVARKHHAIS
RQHISENAIK VLYRLHKSGF KAYLVGGGVR DILLGLEPKD FDVVTNATPE EIKKLFRNCR
LVGRRFRLAH IVFGRDVIEV ATLRGHHVDS GEKISKVNAE GRLLRDNVYG TIDEDAERRD
FTVNALYYDI SDFSIHSYGG GLQDLESRTL RLIGDPQKRY REDPVRMLRA VRFATKLGMS
IDKAAAQPIS ELAPLLKDIP AARMYEEVLK LFFAGQAQNN YVMMRDFGLF APLFPLVDNL
LEEDPKGPSH KMVKAIMRNT DERVEQDKSV TPAFFYAAML WYPLSQRADD IALESGLSQY
DAFYAAMGDV MEQQCRTISI PRRFSTPAKD IWQLQLRFER NQGTRAFKFI EHPKFRAAYD
LLLLRAEAEG GNLAKTAAWW KSFVEGSEEQ RSVIARSTNK GSRSRNNRRR RSPKKTPKAE
|
|---|
| |