Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_3125 |
Symbol | |
ID | 4922088 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 3715952 |
End bp | 3718147 |
Gene Length | 2196 bp |
Protein Length | 731 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640164735 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_001095250 |
Protein GI | 127514053 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.00840861 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTCATCCG ATACGCAACA GGGATCCCAA TCGCTCGAGC AGACGCTCGC TTTTTTATGC GAACACGATC TGGAAGAGGA GCTGCAACTT ATCCTGCAGC AACTTGCCGC CAGCAATCAG TGTGATGGCC TGTTTCTGTT ACGTATTGGC AAGGGCCGTC TGCCGGTGCA GATCGAAGCC ATGTACCAGT CCGATGCCTC TATCTTCAGC AAGCGCGACG CCGAGATGCT GCTCAGCCGG GTGGCTAACA ACCGTCATCT ACACTCCTAT ACCTCACTGC GTGAACCTGC CATCGTCGAA GATGTCGCTT CCGTTATCGA CGACGAGGAC AGCCGCCTGC GTCTGAATCA GGCCAAGATC CGCAGCGTCC TGCTGTTGCC CGTGGGCGGA GAGAGGCACT ATATCTTCGG CGCCTATCGC TACGACTGTG ACGGTGTTTG GCTAGAGGCG ATTCGTCTTA ACCTGCTGCT GGCCGGCAGC CTGCTGGGCC TGGCGCAGGA GGCGGCGCGC CAGCGCTTAA ATGCCAAGAG TAACGAGCTG GTCTGTATCG AGCATCTCTA TCGCCTGCCC ATCCCCTGCG TGCATATCGG CGTGGATGAC AGGGTGATAC GTTACAACCA GAGCGCCGCC GAGAGTCTGC ATGTGGAGAC GCTACAGAAG GTGGAGACCT TGGTACCCAA GCGAGAGCAG AAACACCTGC TGGACACCAT GGCGCTGGTG CGAGACCAGG TGCTGGAGCA GTCCAGTTGT GAGGTACCGC TGAAATACGC CCCCGATGAT GCCCAGGCCA AGGTGACCTT CCTCTGCCTG TCCGGTGAAG ACGGCCCCAT CCTCATGCTG GTGGAGCCTG TGGGCGAGCC GGTTCAGGAG AGTGAGGCGC ACAGTGTTTC GCTCAATTTC GACCCGCTCA CCGGGCTGCC CAATCGCGCC TATTTCGAGG CCCTGTATGA CCTGGCCAAC CCCTGCCAGT GCGAGCGCTC TACCTTTGTG GGGTTCATCA ACCTGGACAG ATTCCAGGTG GTTAATAATG TCAGCGGCCA CAGGGCCGGC GATCAACTCT TGTGTCAGCT CGCCGCCCGC CTGAGTCAGC TGGTGCGCAA GGAGGATGTG ATCGCCCGCC TCAGTGGTGA CGAGTTTGGC ATACTAATGC CCAATATCGA TGTGCAGATC GCCGAGCAGG TGGCCGAGCG TATCTGTCAG GCGATGGCCA ACCACGAATT TAGCTGGGAG GGGCGTAGCC ATAGCGTGAG CGTCTCCATG GGGCTGGCCC GCTGCGAGAG CGAGGTCGAC TCTGTCTCTG ATCTCTTGCG CCGCGCCAGC GCCGCCTGTC GTCTCGCCAA GGAGAAGGGC GGTAACGCCT GGTACTTCTA TAGCACCCAG GATCCTGTGG TGGAGAAGCT CAATACCGAG ATGAGCGCCT CGGTGGATAT CGTCGGCGCC CTGGCCAACG ACAGGTTCGA GCTCTTCTAT CAGCCCATAG AGCCGTTGTA CGCTAGTGAC GACGGCTTGC ATCTGGAGAT CTTGCTGCGC ATGCGCTCCA CCGAGGGCGA GCTGATTCCG CCGGGGATCT TCCTGCCCGC CGCCGAGCGC TTTAACCTAG CGGCCAAGCT GGATCGCTGG GTGATCGACA AGCTGCTGCG CTGGGGCAGT GAAAACCTAG CGCTATGGCA ATCTCTCTCC ATGGTGTCGG TGAACCTGTC GGCGCTCTCC ATCAGCGACA GCGAGTTTAT CAACTGGCTG GAGATGCGCC TGCTGGGCGA GCCCGAACTG GTGAGTAAGC TCTGCTTCGA GATCACCGAG ACGGCGGCGG TGAGTCAGCT GGATCATGCC ACCGGGCTGA TCAACACTGT GAAGCCTCTG GGCTGTAAGC TGGCGCTGGA TGATTTCGGC TCTGGCTTCT CAAGCTTTGC CTACCTTAAG CTGCTGGACG TGGATTATGT GAAGATCGAT GGTCAGTTTA TCCAACACCT GTGCGAGGAT CGCGCCGATC AGGCGATCGT CGCCGCCATC TGCCAGCTGG GCCGCGACAT GGCGTTCGAG ATAGTGGCCG AGTTTGTCGA GTCGGTCGAG GTGGCAAAAC ATCTGCAGAA ACTGGGCGTC GAGTTTGGCC AGGGCTACGG CATCGCGCGT CCCGAGTCGC TCACTTCACT GACCTCGGGT GAAGGCCTGC ACTGGTATCG GGTGCTGGAA GGTTAA
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Protein sequence | MSSDTQQGSQ SLEQTLAFLC EHDLEEELQL ILQQLAASNQ CDGLFLLRIG KGRLPVQIEA MYQSDASIFS KRDAEMLLSR VANNRHLHSY TSLREPAIVE DVASVIDDED SRLRLNQAKI RSVLLLPVGG ERHYIFGAYR YDCDGVWLEA IRLNLLLAGS LLGLAQEAAR QRLNAKSNEL VCIEHLYRLP IPCVHIGVDD RVIRYNQSAA ESLHVETLQK VETLVPKREQ KHLLDTMALV RDQVLEQSSC EVPLKYAPDD AQAKVTFLCL SGEDGPILML VEPVGEPVQE SEAHSVSLNF DPLTGLPNRA YFEALYDLAN PCQCERSTFV GFINLDRFQV VNNVSGHRAG DQLLCQLAAR LSQLVRKEDV IARLSGDEFG ILMPNIDVQI AEQVAERICQ AMANHEFSWE GRSHSVSVSM GLARCESEVD SVSDLLRRAS AACRLAKEKG GNAWYFYSTQ DPVVEKLNTE MSASVDIVGA LANDRFELFY QPIEPLYASD DGLHLEILLR MRSTEGELIP PGIFLPAAER FNLAAKLDRW VIDKLLRWGS ENLALWQSLS MVSVNLSALS ISDSEFINWL EMRLLGEPEL VSKLCFEITE TAAVSQLDHA TGLINTVKPL GCKLALDDFG SGFSSFAYLK LLDVDYVKID GQFIQHLCED RADQAIVAAI CQLGRDMAFE IVAEFVESVE VAKHLQKLGV EFGQGYGIAR PESLTSLTSG EGLHWYRVLE G
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