| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3087 |
|---|
| Symbol | |
|---|
| ID | 4922251 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 3667414 |
|---|
| End bp | 3669276 |
|---|
| Gene Length | 1863 bp |
|---|
| Protein Length | 620 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640164697 |
|---|
| Product | lipid ABC transporter ATPase/inner membrane protein |
|---|
| Protein accession | YP_001095212 |
|---|
| Protein GI | 127514015 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | [TIGR02204] ABC transporter, permease/ATP-binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTCTCAAC CTCTCTCATC CGCCTCTCAT GACGCAGCTT CCGGCCCTAA GCGGTCAGCC
CCCCAACCTA AGCGACCAGG AGCTAAGCAA GCCGTTTTGC CCTGGATAGG TGGTTTCCTG
CGTCCCTATC GCGGCAAAGT GATCGCCGCC ATTGTGTTTC TGTTTATCGG CTCGCTGGCC
TGGCTGTCTC TGGGGCAGGG GGTGCGCCTC ATGGTGGATG AGGGCTTCCT GCGGGAAAAT
GGCGAGCGGC TCAACGAGAT CATCTTGCTG GTGATTGGCA TCACCGCCCT GAGCAGCTCC
GCCATCTTCT GCCGCTTCTA CCTCATGACC TGGCTTGGGG AGCGGGTAAG CGCCGATATC
CGCCTCAAGG TCTATGACCA TCTGCTCAAG CTGTCGCCCG GTTTCTACGC CAGGCTGCGC
ACCGGCGAGG TGATCTCCCG CTTCACCGCC GATGCCACAC TGTTGCAATC TGTGGTGGGC
TCCAGCCTCT CCATGGCGCT GCGCGCCAGC GTTACCGTAG TGGGTGGCCT GGTGATGATG
GCGATCACCA GCCTTAAACT CACCGCCCTG GTGTTGCTGG CCGTGCCTTT GGTGCTGGGG
CCTATCTTCT TCTTTGGCCG TAAGGTGCGC GAGTTGTCGC GTAAAAGCCA GGACAGGGTG
GGTGACCTGG GGGCCTATGT GGATGAGTCG CTGCACGAGA TCCACACTGT GCAGGCCTAT
TGCCATGAAG ACCGCGACAG ACAGCTGTTT TCCGAGCGGG TCGAGGCCGT GATGGAGGCG
GCCAGGGGGC GCATCAAGTA TCGCGCCATC CTCATCTCCC TGGTGATGTT TCTCAGCATA
CTCGCCATCG CCCTGATCAC CTGGGTGGGC GCCAAGGATG TGATGAGCGA GGCGATAACC
CCGGGCGAGC TCTCCGCCTT CATGTTCTAT GCCGTGATGG TGGCGGGCGC CGTGGCGACC
ATCAGCGAGG TGATTGGTGA GATCCAGCGC GCCGCCGGTG CGACGGAGCG GCTTATCGAG
CTGGTGGAGA CGCCTATCGA TATTCCTCTG GCGCCAAAAC CAGTCAGCTT GCCAGCAAAG
GTGCGCGGCG AGCTGAGCCT AGAGCAGGTG CGTTTCAGCT ATCCTGTTCA GGCCAGTGCC
GATAGTGCTG AGGAGATGGA AGCGCAGGCT GGCGTCGAAG TGATCCGTGG CCTGAGCCTG
CATATCGCCC CCGGCGAGCG GGTGGCCCTG GTGGGGGCGA GCGGCGCCGG CAAGAGTACC
CTGTTTGAGC TGTTGCAGCG CTTCTATGTG CTGGACAGCG GGGTGATCGC CCTGGACGGT
ATCGACATCG CCAGCCTGCG ACCACAGGAT CTGCGCCAGC AATATGCCCT GGTGCCCCAG
GAATCGGTGA TCTTCGCCAC TAGCGTGCTG GAAAATGTGC GTTACGGCCG CCCCGACGCC
AGTTTAGAAG AGGTGCAGGC CGCCTGCGTC GCCGCCCGCG CCGATGAATT TATTGCTGAT
TTTAGCGAGG GCTATCAGAC CTATCTGGGT GAGCGCGGCG TGCGTCTATC TGGTGGGCAG
AAGCAGCGTA TCGCCATCGC GCGGGCGATA TTGGCCGATA GGCCGGTATT GCTGCTGGAT
GAGGCCACCA GTGCCCTGGA CGCGGTCAGC GAACAGAAGG TGAAGCAGGC GCTGGATGTG
CTGATGCAGG GGCGCACCAC ACTGATCATC GCCCATCGCC TGGCAACCGT GCTCAACGCC
GATCGCATCC TAGTGATGGA TAAGGGGGAG CTGATCGCCA GCGGTACCCA TGGCGAGCTG
ATGCAGAGCA ACAGCCTCTA CCGCGAGTTC GCCAGCCTGC AGCTACTCTC GGAAGAAGCC
TAG
|
|---|
| Protein sequence | MSQPLSSASH DAASGPKRSA PQPKRPGAKQ AVLPWIGGFL RPYRGKVIAA IVFLFIGSLA
WLSLGQGVRL MVDEGFLREN GERLNEIILL VIGITALSSS AIFCRFYLMT WLGERVSADI
RLKVYDHLLK LSPGFYARLR TGEVISRFTA DATLLQSVVG SSLSMALRAS VTVVGGLVMM
AITSLKLTAL VLLAVPLVLG PIFFFGRKVR ELSRKSQDRV GDLGAYVDES LHEIHTVQAY
CHEDRDRQLF SERVEAVMEA ARGRIKYRAI LISLVMFLSI LAIALITWVG AKDVMSEAIT
PGELSAFMFY AVMVAGAVAT ISEVIGEIQR AAGATERLIE LVETPIDIPL APKPVSLPAK
VRGELSLEQV RFSYPVQASA DSAEEMEAQA GVEVIRGLSL HIAPGERVAL VGASGAGKST
LFELLQRFYV LDSGVIALDG IDIASLRPQD LRQQYALVPQ ESVIFATSVL ENVRYGRPDA
SLEEVQAACV AARADEFIAD FSEGYQTYLG ERGVRLSGGQ KQRIAIARAI LADRPVLLLD
EATSALDAVS EQKVKQALDV LMQGRTTLII AHRLATVLNA DRILVMDKGE LIASGTHGEL
MQSNSLYREF ASLQLLSEEA
|
|---|
| |