| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3081 |
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| Symbol | |
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| ID | 4922324 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3657178 |
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| End bp | 3659751 |
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| Gene Length | 2574 bp |
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| Protein Length | 857 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640164691 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001095206 |
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| Protein GI | 127514009 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAACAC ATAAAAATAA AGGTTTCGGC GTCAGTGCGC TGAGTTTTGC CATCTCTTTG
GCATTGACAG GGTCGTTAGC GAGTACACAG GCGTTGGCCG ATGATCAGCA GGCAGAAGCG
TCTCAGAATA TTGAAAAAAT TGCCGTGGTG GGAACACGTT CTGCGCCACG CTCTATCGGC
GATTCGCCGG TACCTATCGA TATCATTAGC AGCGATGATC TGAAGAAGAA TGGTTCTACC
GACATGATCG ACATGCTGGT CACCACTGTG CCTTCTTTCA ACTCCCGTGC CCAGCCCATC
AGTGATGCGG CAACCCTGAT CCGTCCGGTC AACCTACGTG GTCTGCCGTC AGACAGCACC
TTGGTATTGG TCAACGGCAA ACGTCGTCAC CGCGCCTCGG TGATCGCCTT CCAGGGCGGT
GGCATCAACG ATGGTGCCCA GGGCCCGGAT ATCTCGGTCA TTCCGAGTGC GGCGCTGAAA
CAAGTAGAGG TGCTACGTGA CGGTGCGGCG GCGCAATATG GTTCAGATGC CATCGCGGGT
GTGATGAACT TTGTGCTTAA AGATGATGCC GAAGGTGGCT CTATCACGGT CGGCCAAGGC
GAATACTATG AGGGCGACGG TGCCACTACC ACTATCGATG CCAACGTGGG ACTCCCTCTG
TCAGACGCTG GGTTTGTGAA CCTCAGTCTG CAATATAAGA ATGCCGATGC GACCAGCCGC
AGCATGCAGC GTCCGGATGC GGCCAACCTG ATTGAGCAGG GCAACACCTT CGTCCAAGAC
CCTGCCCAGG TATGGGGTAA CCCTGAGATC AAGGATGACT ACAGCTTCTT CCTTAACTCT
GGCTACGACA TCAACGACAA TGCGCGTCTG TACGCCTTTG GTAACCTCTC TTCGCGCGAT
GTGGTCGGTG GTTTCTACTA TCGTAACCCC CACAATCGCG GCAACGTCTA CTCGTTAGAT
GGCGGTGAAA CCCTGTTGGT GGGTGCGGTC AATGGCGATC CTTCTACCTG TGCCGTGGTG
CCAATTCCAA AGAATGCAGA TGGTAGCGAC GGTAACGTGC TCGAGACAGA TGCCTACAAG
GCGATGCTGG CCGATCCTAA CTGTTTCGCT ATGAACCAGC TGCGTCCTGG CGGTTATACG
CCGCAGTTTG CCGGTACTGT GGAAGACACC TCTTTCTTCG CCGGCGTTAA AGGCGAGCTC
GGTGCCTGGA ACTATGATTT CAGCGCGGGT ATGGGTAACA ACAAGTCGAC CTTCAGCCTG
AAGAATTCGC TTAACCCGTC ACTGGGCTTA GACACACCGA CCGACTTTGA AACCGGTGCC
TATGAGCAGG CCGAGACCAC GGTTAACCTG GACTTCTCGC GCATGCTCAC CCTGGGCAGC
GTCGAAGATA TCAGCTTCGC GACAGGTTTC GAGTGGCGCG AAGAGTCGTT CGAGATCACT
CAGGGCGAAG AAGCCTCTTG GATTGCCGGC CCATACGCCG ACCAGGGCTT CAACATCGGC
TCTCACGGCT TCAAGGGTTT CGGCCCAGAG TCTGCTGGTA AGAACTCACG TAACAACATA
GGCGTCTATG CCGACATGGA AGCCTATTTG GGCGAGCGCT GGTTGCTTGG CGCCGCGCTG
CGTTACGAGG ACTTCTCTAC CTTCGGTGAC ACCCTGAACT ACAAGCTGAC TGCTCAGTTC
ACGGCTACCG ACGATCTCTC TTTCCGCGCG TCACACAGCA CAGGTTTCCG TGCGCCGACC
GTGGGTCAGG AGAACGTGGT CAACACTCAG ACCTCCATCG TTAACGGTGA CCTGATCCAG
ACCTTTATCG CGCCGCCAAC CGATCCGCTG TCGGCCTTCT ATGGCGGTAA GGTGCTTAAG
CCTGAGGAGT CTGTCAGTTA CGCCCTCGGC GCCGTGTTCG AGCACGAAAA TCTTTTCGTG
ACTCTGGATT ACTACAACAT CGAGGTGACA GGCCGTATCG CGCAGTCAAG CCAGATTGAA
GTTGAGGCGA AAGACTATGA CGCGCTGCGC GCCGCCGGTG TCGAGTTCCC TGAGCTTATT
TCTGCGGTGA CTTACTACAC CAACGACTTC GATACCACGA CTCAGGGTAT CGATCTGGTG
GCCTCATACG ACACTCAGCT ATTGTCGGGC GATACCAAGT TCAGCCTGGC CTATGGCTGG
ACTGATACTA GCGTCGACAA GTACAACCCA AATACCACAG ATGAGGGTAA GGTGCGTCGT
CTAGAAGATG GTATTCCGGC TCACCGTGCG ACTCTGACCT GGGCGCAGTC TTGGGACAGA
TTCAGCATGT CGCTGCGTGG TAACTACTTC GGTGAGTACT ATGCGACCCA CGCCGACGAT
ACCTCGGATT GGGGCTCTGA GATGGCCGAT TCTGCGGTGA CCGTGGATCT GGAGCTAAGC
TATCAGTTCC TCGATAGCCT GACTGTCTCT ATCGGTGCCA ACAACCTGTT CGATCAGGAG
GCGCAGAAGC TCAAAGACGG TACCCGTGGT GAGCTAGGTG CGATCTACTA TGAGAGTGGC
CCGTTCGATT ACAACGGTGG CTACTACTAT GGTCGCGTGA ACTACCGCTT CTAA
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| Protein sequence | MTTHKNKGFG VSALSFAISL ALTGSLASTQ ALADDQQAEA SQNIEKIAVV GTRSAPRSIG
DSPVPIDIIS SDDLKKNGST DMIDMLVTTV PSFNSRAQPI SDAATLIRPV NLRGLPSDST
LVLVNGKRRH RASVIAFQGG GINDGAQGPD ISVIPSAALK QVEVLRDGAA AQYGSDAIAG
VMNFVLKDDA EGGSITVGQG EYYEGDGATT TIDANVGLPL SDAGFVNLSL QYKNADATSR
SMQRPDAANL IEQGNTFVQD PAQVWGNPEI KDDYSFFLNS GYDINDNARL YAFGNLSSRD
VVGGFYYRNP HNRGNVYSLD GGETLLVGAV NGDPSTCAVV PIPKNADGSD GNVLETDAYK
AMLADPNCFA MNQLRPGGYT PQFAGTVEDT SFFAGVKGEL GAWNYDFSAG MGNNKSTFSL
KNSLNPSLGL DTPTDFETGA YEQAETTVNL DFSRMLTLGS VEDISFATGF EWREESFEIT
QGEEASWIAG PYADQGFNIG SHGFKGFGPE SAGKNSRNNI GVYADMEAYL GERWLLGAAL
RYEDFSTFGD TLNYKLTAQF TATDDLSFRA SHSTGFRAPT VGQENVVNTQ TSIVNGDLIQ
TFIAPPTDPL SAFYGGKVLK PEESVSYALG AVFEHENLFV TLDYYNIEVT GRIAQSSQIE
VEAKDYDALR AAGVEFPELI SAVTYYTNDF DTTTQGIDLV ASYDTQLLSG DTKFSLAYGW
TDTSVDKYNP NTTDEGKVRR LEDGIPAHRA TLTWAQSWDR FSMSLRGNYF GEYYATHADD
TSDWGSEMAD SAVTVDLELS YQFLDSLTVS IGANNLFDQE AQKLKDGTRG ELGAIYYESG
PFDYNGGYYY GRVNYRF
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