| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3074 |
|---|
| Symbol | |
|---|
| ID | 4922317 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 3648928 |
|---|
| End bp | 3649464 |
|---|
| Gene Length | 537 bp |
|---|
| Protein Length | 178 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640164684 |
|---|
| Product | pilin, putative |
|---|
| Protein accession | YP_001095199 |
|---|
| Protein GI | 127514002 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4970] Tfp pilus assembly protein FimT |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCTTGG CGCATAAACG CGGTTTTACC CTTATCGAAC TCGTGGTCGT TATCATAGTG
CTGGGGATCC TGGCGGTGAC CGCCCTGCCA AAATTTATCA ATCTCTCCCA GGACGCTCAA
GTCGCCAGCG TCAAGGCGAC CGGCGGCGCC TTCAAGTCCG GTATCGACAT GGCCCGCGCC
GTCTGGGCCG TTCGCGTCGG CTCAGGCCCG GCGGAAAACC TCAAGACCTT CGGTGACGAC
GAAGCCGGCG AGATGGATTT TAACGCCAAT GGCTGGCCGG CGCAGCACTA CTTTACCGAT
AACGAGGCCT CGCCGCAGCT GGACAACGTA GAAGATTGTA TCTCGGTGTG GGAGACAGTG
TTTCAGGGCG ACGAGCCCAG CGTCTCACGC AGCGATGCCC AGACGAGCAC AGATTATAAA
GCCAACTATA TCAGCGTGAA CCAGTGTCGC TACAACCTGA GCGACAATCA AAACCTCGGC
ATCTACTATG ACTCACGGGA TGGCCGGGTG CTGGTCGACA GCGATCCCGC CAGTTAA
|
|---|
| Protein sequence | MSLAHKRGFT LIELVVVIIV LGILAVTALP KFINLSQDAQ VASVKATGGA FKSGIDMARA
VWAVRVGSGP AENLKTFGDD EAGEMDFNAN GWPAQHYFTD NEASPQLDNV EDCISVWETV
FQGDEPSVSR SDAQTSTDYK ANYISVNQCR YNLSDNQNLG IYYDSRDGRV LVDSDPAS
|
|---|
| |