| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3038 |
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| Symbol | |
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| ID | 4923019 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3608511 |
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| End bp | 3610283 |
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| Gene Length | 1773 bp |
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| Protein Length | 590 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640164648 |
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| Product | asparagine synthase (glutamine-hydrolyzing) |
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| Protein accession | YP_001095163 |
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| Protein GI | 127513966 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0367] Asparagine synthase (glutamine-hydrolyzing) |
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| TIGRFAM ID | [TIGR01536] asparagine synthase (glutamine-hydrolyzing)
[TIGR03104] asparagine synthase family amidotransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTGCGGGA TTGCCGGAGA ACTCTCTTTT ACCACTAGCG CCAAGGTCGA CCAAGTCGCC
GCCATGCTGG ATAAACTGGC GCCAAGGGGA CCAGACGGAC AGGGCCTCTA TAGCCTAGGA
CCATGCTGTC TGGGCCACAG GCGACTAAAG ATCATCGACC TGAGTGAACA TGGCGCCCAG
CCTATGGTCG ACGCCGAACT CGGGCTTACC CTGGTATTCA ACGGCTGTAT CTACAACTAC
CGCGCATTAC GGGCCGAACT GTCTGAGTTG GGCTACCACT TTTTCTCCCA CAGCGACAGC
GAGGTAATAC TCAAGGCCTA TGCCCATTGG GGTCGCCAAT GTGTCGAAAA ATTCAATGGC
ATGTTTGCCT TTGCCATTCA TGAGCGTGAT ACAGGACGGC TCTTTATCGC CAGAGACAGG
TTGGGCATCA AGCCTCTCTA CTACTTCAAA GATGGCCACA GTCTGGTATT TGCCTCCAGC
TTACCCGCCC TCTTGCGTCA TCCGGTCGCC GATACAGAGA TAGACCCCCA GTCTCTCAAC
CACTATCTCT GTTTTCGCGC CATCGTCGGC GACAAAACCT TGTTTAAGCA GATCCATAAA
CTCGAGGCGG CACATTGGAT GCTGGTGAGA CCCGACGGCC AGGTTGACCA CCAGTCCTAC
TGGCACCTCT CACCAGGCTC TAGCCTTGAG ACGGAAACCG AGGAGACCTG GTCTCAACAA
CTGGAACAGA AGCTGTTTGA CAGCGCCAAG CGCCGTTTAG AAGCCGACGT ACCTGTTGGA
GTGCTCCTCT CCGGCGGCTT AGATTCATCA TTGATCGTGG GCTTGTTGCA CGAGCTGGGT
CAAAAAGAGA TCCATACCTT CTCTATCGGC TTTGATGATG TCGCAGACGA GCAAGGTAAT
GAATTCAAAT ACTCAGATCT GATCGCCGAG CATTACCAGA CTCGACATCA AAAGATAGTG
GTCAGTCATA GTGAGCTTAT CTCTCATCTG CCCGACTGCG TGATGGCGAT GTCTGAGCCC
ATGGTGTCTC ACGATGTCAT CGGCTTCTAT CTGCTCTCTA AAACTGTTAG TCAACACGTC
AAGGTGGTTC AGAGTGGCCA AGGGGCCGAT GAGGTCTTTG GCGGTTATCA CTGGTATCCT
CCTATGGTCG ACGCCACCGC GGAAGATGAG GCACAAACCT ATCAAGACGC CTACTTCTCC
TGGCAATATC CAGAATACCA GCAGCTGGTC GCCGAGCCGC TCCTCGATGG CGATCATGCA
GGCGATTACG TACGGCGCTA CTTCGCCCAT TGCCCGGCCG AAACTGCCAT CGACAAGACC
CTGATGTTGG ATACTCGGGT GATGTTAGTC GACGACCCGG TTAAGCGGGT CGATAACATG
ACCATGGCCT TCGGGCTCGA AGCCAGAGTT CCCTTCTTAG ACCATGAGCT GGTCGAACTG
GCCAGTCGCA TCCCCTTCGA TCTCAAGCTC AAGGAGGGCG GCAAATACCT ACTCAAACAG
GTCGCCAGAC GCATCATCCC CCATCAGGTA ATAGACAGAC CTAAGGGCTA CTTTCCTGTG
CCCGGGCTGC GTAACATGCA GGGGCCTTAC CTGGCTCTCG CTAAAGAGGT CTTTGCCCGT
CCACAGGCCA GAGCAAGGGG AATCTTCAAT ATGGACTATA TCGACGCCAT GCTCGCTAGC
CCTGAGCAAC AACTCACTCG CTTCGGCTCA CGTCTGTGGC AGGTGACACT CTTAGAACTC
TGGCTGCAGC TTCATCTAGA CCATGAAAGC TAG
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| Protein sequence | MCGIAGELSF TTSAKVDQVA AMLDKLAPRG PDGQGLYSLG PCCLGHRRLK IIDLSEHGAQ
PMVDAELGLT LVFNGCIYNY RALRAELSEL GYHFFSHSDS EVILKAYAHW GRQCVEKFNG
MFAFAIHERD TGRLFIARDR LGIKPLYYFK DGHSLVFASS LPALLRHPVA DTEIDPQSLN
HYLCFRAIVG DKTLFKQIHK LEAAHWMLVR PDGQVDHQSY WHLSPGSSLE TETEETWSQQ
LEQKLFDSAK RRLEADVPVG VLLSGGLDSS LIVGLLHELG QKEIHTFSIG FDDVADEQGN
EFKYSDLIAE HYQTRHQKIV VSHSELISHL PDCVMAMSEP MVSHDVIGFY LLSKTVSQHV
KVVQSGQGAD EVFGGYHWYP PMVDATAEDE AQTYQDAYFS WQYPEYQQLV AEPLLDGDHA
GDYVRRYFAH CPAETAIDKT LMLDTRVMLV DDPVKRVDNM TMAFGLEARV PFLDHELVEL
ASRIPFDLKL KEGGKYLLKQ VARRIIPHQV IDRPKGYFPV PGLRNMQGPY LALAKEVFAR
PQARARGIFN MDYIDAMLAS PEQQLTRFGS RLWQVTLLEL WLQLHLDHES
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