| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3003 |
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| Symbol | fadE |
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| ID | 4923408 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3564950 |
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| End bp | 3567184 |
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| Gene Length | 2235 bp |
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| Protein Length | 744 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640164613 |
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| Product | acyl-CoA dehydrogenase |
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| Protein accession | YP_001095128 |
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| Protein GI | 127513931 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1960] Acyl-CoA dehydrogenases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00231993 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTATTA GAACAAAATT TAAAAAAGTA CTGCCGAGTA TTTCTACCAC TGAACAAGAG
GCGCTCGACG CCGGTGATGT ATGGCTAGAG GGATCTATCT ATCAGGGGAT CCCAGACTTC
GATGCCCTGC GTCAGGTACC GGGGGCGACC CTGTCCGATG AAGAGCAGGC CTTCCTCGAC
GGCCCAGTGC AGACACTTAT CGAGATGGTG GATGATTTTG CCATTCAAAA CAGCCTGCAT
CTGCCAGACA ACATACTGAA TTTCCTAAAA GAGCATAAGT TCTTCTCGCT GATCATTCCT
AAGGCCTTCG GCGGCCTGGA ATTCAGCCCT TATGCCAACT CGACAATTGT GGCCACCATT
GCCGCCAAGA GTTCGGCGGT GGCGGTGACC GTCATGGTGC CTAACTCCTT AGGTCCGGGT
GAGCTGCTAA TGCATTACGG TACTCAGGCC CAGCAAGATT TCTGGCTGCC GCGTCTGGCC
AATGGCCAGG AGATCCCCTG TTTCGCATTG ACCAGCCCAG AGGCGGGCTC GGACGCCGGC
GGTATTCCCG ATATCGGCAC TGTGACCATG GGCGAATACC AGGGCGAGCA GGTGCTCGGC
CTGTCGGTGA CCTGGGACAA GCGTTACATC ACGTTAGCGC CTATCGCTAC CGTGCTGGGG
CTGGCCTTCA AGGTGGAAGA TCCACAAGGC CTGCTGGGGG GCAAGGAGCA GCTGGGGATC
ACCTGCGCGC TGATCCCTAA GTCGCATCCG GGTGTCGAGC TGGGCAACCG TCACGATCCT
ATGGGTTGTC GCTTCTATAA CGGCACCACA CGCGGTGAGA ATGTATTTAT CCCGATGGAT
TTCATCATAG GCGGTCAGCA AAATATTGGC CGTGGCTGGC AGATGCTGGT GGCCTGTCTC
GGCGCCGGTC GCGGCATCTC GCTGCCGGCT CTCGGGGTCT CGGTAAGCCA GGCGTCTTTC
AAGTCGTCGG CGGAATACGC CGCGGTGCGT GAGCAATTTG GCCTGGCCAT CGGCAAGTTC
GAGGGGATTC AGGAGAAGCT GGCGGATATC GCAGGTAAGA CCTATCTGCA AGAGGCGATG
CGTGTACTGA CAACAGAAGG CCTGGGCCTG GGGCTCAAGC CATCAGTGGT GACCGCAATG
GCCAAGTACC ATATGACGGA GATTGGCCGC GACGTGCTGA ACTCGGCCAT GGATATTCAG
GCCGGTAAGG CGATTCAGCG TGGTCCGCAA AATACCCTGG CCTCTGGCTA TGTGGCGCAG
CCTATCGCCA TCACGGTGGA AGGGGCGAAC ATTCTGACCC GTAACCTGAT GATCTTTGGT
CAGGGCGTGA TGCGCTGTCA CCCTCATTTG CAGAGCATGG TTGAGGCGAT TCACAGCGAC
GACAAAGATG CCGACAAGAC CTTTAACCGT ATCTTTAAGC AGACTGTTGG CTACAGTGTG
GGCAACAGCC TGCGCGCCTT CCGCCTGGGT CTGCTTCCTT TTACCGCCGA TGCCAAGTCA
GAGCTGAGCG AGGTGGTAGA ATATGAGAAG GCGGTGCACA AGCTGGCGTC GAAACTGGCC
GTATATGCCG ACTTCTCTCT CTTGGTGCTT GGCGGCAAGC TCAAGCAGGC CGAGATGCTG
TCGGCGCGTC TGGGGGATGT GATGAGCTAC CTGTACGCGG CCATGGCGTC GATTCGCTAC
TACGAGCAGA AGGTGAGCAG CGAGCATCGT GCCCAGGCTA AGCCTTACTT CGAGTACGCG
ACCCGCTGGG CGCTGGTGAA CGCCGAAAAT GCCCTGCTGA GCTTCCTGGA TAATTTCCCG
TCGGCTGCGA CACGTCAGCT GATGAAGCTT ATCACTGTGA CCTACTCGCC TAAGATGAAG
AAGATCAACG ACGACCTGAT CCGCGAACTG GCCCATGAGG CGCAGCTCAA CACCCAGATC
AAGCGTCAGC TGACTCATCT GGTGAAGCCA GTACCGGGCG ATGGCAACGA CATCAACCAG
CAGGCTTATC TGGCGAAGAT CGCCTGTCTG CCGCTGCTGG CCAAGGTGAA GAAGGGACTG
AAGCAGGGTT ACTTCAAGTC TGGGGTGAGA TTCGCCCAGA CGCTGGACCG CGCCCGCGAA
GCCAAGATCA TCACAGAGGG CGAGCACAAG CAACTGCTGG ACTATAACCT CAAGCGTGAG
CGCGCCATTC GTGTCGATGA GTTCGACTTC GACATGCAGC TTATAAGCGA CAAGGCGGCG
CTGAAGATAG CCTAG
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| Protein sequence | MSIRTKFKKV LPSISTTEQE ALDAGDVWLE GSIYQGIPDF DALRQVPGAT LSDEEQAFLD
GPVQTLIEMV DDFAIQNSLH LPDNILNFLK EHKFFSLIIP KAFGGLEFSP YANSTIVATI
AAKSSAVAVT VMVPNSLGPG ELLMHYGTQA QQDFWLPRLA NGQEIPCFAL TSPEAGSDAG
GIPDIGTVTM GEYQGEQVLG LSVTWDKRYI TLAPIATVLG LAFKVEDPQG LLGGKEQLGI
TCALIPKSHP GVELGNRHDP MGCRFYNGTT RGENVFIPMD FIIGGQQNIG RGWQMLVACL
GAGRGISLPA LGVSVSQASF KSSAEYAAVR EQFGLAIGKF EGIQEKLADI AGKTYLQEAM
RVLTTEGLGL GLKPSVVTAM AKYHMTEIGR DVLNSAMDIQ AGKAIQRGPQ NTLASGYVAQ
PIAITVEGAN ILTRNLMIFG QGVMRCHPHL QSMVEAIHSD DKDADKTFNR IFKQTVGYSV
GNSLRAFRLG LLPFTADAKS ELSEVVEYEK AVHKLASKLA VYADFSLLVL GGKLKQAEML
SARLGDVMSY LYAAMASIRY YEQKVSSEHR AQAKPYFEYA TRWALVNAEN ALLSFLDNFP
SAATRQLMKL ITVTYSPKMK KINDDLIREL AHEAQLNTQI KRQLTHLVKP VPGDGNDINQ
QAYLAKIACL PLLAKVKKGL KQGYFKSGVR FAQTLDRARE AKIITEGEHK QLLDYNLKRE
RAIRVDEFDF DMQLISDKAA LKIA
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