| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2989 |
|---|
| Symbol | |
|---|
| ID | 4923790 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 3548272 |
|---|
| End bp | 3548883 |
|---|
| Gene Length | 612 bp |
|---|
| Protein Length | 203 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640164599 |
|---|
| Product | GDSL family lipase |
|---|
| Protein accession | YP_001095114 |
|---|
| Protein GI | 127513917 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2755] Lysophospholipase L1 and related esterases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.816827 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTAA AGTGGTTGCT TGTGCCCGTT ATCTTGATCT TGGCCATCAT CTTCTGGCCA
AGTGGCGGCC CCTCTCTTGC CCCTTTGTCG GGGGGGGCCA GGATCCTCGC TTTTGGCGAT
AGCCTGACTC AGGGCGTGGG AGCCAGCCCC GGCATGGATT ATCCTGCGCA GCTGCAAGCA
ATGAGCGGAC GCGAGGTGAT CAACGCCGGT ATCTCGGGGG AGACCACATC CCAGGGCCGC
GAGCGCTTCG CCCGAGTGCT GGATGAGACG GCGCCGGATC TCATCATCTT GCTCGAGGGA
GGCAATGATT TTCTGCGCAA TGGCAACGCG GCGCAGGTCG AGGCCAACCT CTCAGCCATG
CTGGCACAGG CTCAGGGGCG CGATATTCCT GTGGTGTTGA TTGGCGTGCC CCAGAAGAGC
ATCTGGCTGG AAACCGCGCC CCTGTATGGG CAGCTGGCCG CGCAATATCA GCCGCTATTT
ATTGAGGATT TTCTGACAGA ACTGCTAAAA TTATCAGAGG TAAAATCTGA TGCGATTCAC
CTCAACGATG AAGGCTATCG TCGTCTCGCC GAGCACCTAT ATCAGAGTCT GCAACAGGCA
GGTGCCCTAT AG
|
|---|
| Protein sequence | MKLKWLLVPV ILILAIIFWP SGGPSLAPLS GGARILAFGD SLTQGVGASP GMDYPAQLQA
MSGREVINAG ISGETTSQGR ERFARVLDET APDLIILLEG GNDFLRNGNA AQVEANLSAM
LAQAQGRDIP VVLIGVPQKS IWLETAPLYG QLAAQYQPLF IEDFLTELLK LSEVKSDAIH
LNDEGYRRLA EHLYQSLQQA GAL
|
|---|
| |