Gene Shew_2967 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2967 
Symbol 
ID4924061 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp3519716 
End bp3522289 
Gene Length2574 bp 
Protein Length857 aa 
Translation table11 
GC content57% 
IMG OID640164577 
ProductTonB-dependent receptor 
Protein accessionYP_001095092 
Protein GI127513895 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG4771] Outer membrane receptor for ferrienterochelin and colicins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000174041 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAGAC CTCAATATTG GCCCAGCGCC TGCGCTATCG CCATTACCAT TGCGCTAACC 
CCACATGTTT ATGCGGCCGA CGAAGGCGTC GAGCGCATCG AAGTCACAGG CTCTCGCATT
AAACGTACCG ATATCGAAGG CCCATCACCG ATCCAGTCGA TCAACAAAGA CGATATCGCC
AACATGGGTT TCGACAACCT ACAACAACTG CTGGAACGCA TGCCAGCCAA CGGCGCGGGC
GCCTTCTCGA CCCGAGGTAA CAGCCAGGAC TCTACCGCCA ACGGCGCGGC CTCTATCAGT
CTGCGCGGCA TGGGTCCAGA CGCTACTCTG GTACTGATCA ACGGCCGCCG TGTGGCCATC
AGCTCATTCG CCGAGGGGAT CACTAACTCC TTCGTCGACA TCAACAATAT TCCTGTATCC
GCCATCGAGC GTATCGATAT CCTCAAAGAT GGCGCCTCGG CCATCTATGG TTCAGACGCC
ATCGCCGGTG TGGTCAACAT CATTCTGCGT AAAAACTTCG AAGGTATCGA AATCAACCTG
GGCTACGGCG AAGCCTCTGG CTCCAGCTAT GACGAACAGA GCGGCTCTAT GCTGTGGGGC
ATGCAATCCG ATAAGGGCAG CGCCTCTATT ATTCTCGATT ACTTCAAAAA CAGCACTCTC
GCCGCCACCG AGATGGGCCG CTTCGGCACC GCCAACCAGA GCCCATACGG CGGTGAAGAT
TTCCGCTCGT CACGTGGCTT CCCAGGCTAC TTCTATGTCG ATGGCGTTAA GACCATAGAC
CCTGATTGTC CACCCGACTC GGCCACCGCC AGCGGCAGCT GTCTGTTCGA CTACGGTCCA
TACAACCTCA CTATCCCTGC CGCCGAGCGT GTGGGCGCAA TCGCCCAGTT CGACTATCAC
CTGAGCGACG AGATGACCGC CTTCTTAGAA GTTGCGGCCC AGCACAACAC CTCTGAGGCC
GGCGGCGCGC CGACCCCGCT GGATGAAGAT GCCATGCTGA CGGTTCCAGG CACCCACCCT
AACAACCCGT GGGGCAAGGA TATTGAGATA GGTCGTTACC GCACAGTGGA TGCCGGCGCT
CGTCGCTGGG ACATAGAATC TGACACCCTA CGTCTGGTTG CCGGTCTACG TGGCAACATA
GATGAATGGG ATTGGGAGGT CTCGGCTCAG AAAGGCCGCA GCGAATCGAC CCAGAAGGGT
GACAGAACCC AGGGCTGGGT GCGCACCGAC TTCCTGCAAG CCGAGATCGA TGCCGGTAAC
TACAACCCAT TTGGCGGCAC CATGAATTCA CAGGATGTGA TCGATCGCAT CACCACCAGC
CTGGTTCGTC AGGGTGTGTC ACACCTGACC GCTTATGACG CCAGCATCAC GGGCCCGGCC
TTTACCCTGG CGGATCGTGA AGTCATGATG GCGGCGGGCG TCGAGTACCG CGAAGAGGAC
GTTAGCGATG TCCCGGATGA TCAATTCCAG CGCGGCCTGA TCTTCGGTAC CGAAGCCGTA
TCAGCCCAGG CAGACCGCGA CCAGTACGCG GCCTATGTGG AGTTCTCTAT CCCAGTTACC
GACAGCTTCG AGTTGCAACT GGCCGGCCGT TACGATCACT ACAGCGATTT CGGTTCAACC
ACCAACCCTA AGGTTGCCTT CCAATGGGGA ATTAGCGATC AGCTGACCGC TCGCGCCTCT
TGGGCGACCG GTTTCCGCGC ACCATCTTTG GCACAAATCG GTCTTGGCCC ATCGAGAGAG
AGTAGCTTCT TCATCGATAC CTACCGCTGC GCCGCCGACA ACGTCGACTG TACCGCGCTG
GACTACAACA CAGAATTTGC CGGTAACTCA GAACTGGACG CCGAAGAGTC AGAAACCTGG
AACGCAGGCC TGATCTGGGC ACCTAGCCAG AAGTTTGATA TTGGCTTCGA CGTCTTCAGT
ATCACCCAGG ACAACAAGAT CGATAAGCAG CCACTGGGCG AGATCTACCT GGCCAACTGT
AACGATCAAA ACAGCACTGT GTGTGAGCGT CTGGCGCCGC AGCCGGGGCA AACTCTGGGC
CCAATCAGCC TAATCCACTC AAGCTTCATC AACTTAAGTT CGCAAGAGGT TCAAGGGGTG
GACGTTTCCA GCCACTACGG CCTGGAGATG GACCGCTTCG GCGACCTCAA GTTTGGCCTG
GAATACAGCT ACCTGCACAA GTTTGAGAAG GACAAGCTGG ATTACACCGG CGAGTACCGC
TACCCGCAAC ATCGCTGGTT GCTGACCACT AACTGGACCA TGGATGACTT CGCCGCCAAC
ATCAACTTCA GCTACATCGG CGAGTTTGAA GATACGCCAG ATATCGACTT CGACGGCTCA
CTCGACTTCG AGGTCAACAA GTCGCGTATG GTCGAGTCGC AACTCTTGGT GGACATGTCC
GGTTCATACC GCTTCAACGA CACCTTCAAG TGGACAGTCG GCGTCAACAA CGTAATGGAT
GAAGAGCCGC CATTTGCCAT CGGCGACGGC GACACCGACC TCTACGGCTA TGTGATTGCC
ACCCATAACC CTATGGGCCG CTACTTCTAC ACCAAGTTGA GCATGAGGTT CTAA
 
Protein sequence
MKRPQYWPSA CAIAITIALT PHVYAADEGV ERIEVTGSRI KRTDIEGPSP IQSINKDDIA 
NMGFDNLQQL LERMPANGAG AFSTRGNSQD STANGAASIS LRGMGPDATL VLINGRRVAI
SSFAEGITNS FVDINNIPVS AIERIDILKD GASAIYGSDA IAGVVNIILR KNFEGIEINL
GYGEASGSSY DEQSGSMLWG MQSDKGSASI ILDYFKNSTL AATEMGRFGT ANQSPYGGED
FRSSRGFPGY FYVDGVKTID PDCPPDSATA SGSCLFDYGP YNLTIPAAER VGAIAQFDYH
LSDEMTAFLE VAAQHNTSEA GGAPTPLDED AMLTVPGTHP NNPWGKDIEI GRYRTVDAGA
RRWDIESDTL RLVAGLRGNI DEWDWEVSAQ KGRSESTQKG DRTQGWVRTD FLQAEIDAGN
YNPFGGTMNS QDVIDRITTS LVRQGVSHLT AYDASITGPA FTLADREVMM AAGVEYREED
VSDVPDDQFQ RGLIFGTEAV SAQADRDQYA AYVEFSIPVT DSFELQLAGR YDHYSDFGST
TNPKVAFQWG ISDQLTARAS WATGFRAPSL AQIGLGPSRE SSFFIDTYRC AADNVDCTAL
DYNTEFAGNS ELDAEESETW NAGLIWAPSQ KFDIGFDVFS ITQDNKIDKQ PLGEIYLANC
NDQNSTVCER LAPQPGQTLG PISLIHSSFI NLSSQEVQGV DVSSHYGLEM DRFGDLKFGL
EYSYLHKFEK DKLDYTGEYR YPQHRWLLTT NWTMDDFAAN INFSYIGEFE DTPDIDFDGS
LDFEVNKSRM VESQLLVDMS GSYRFNDTFK WTVGVNNVMD EEPPFAIGDG DTDLYGYVIA
THNPMGRYFY TKLSMRF