Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2967 |
Symbol | |
ID | 4924061 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 3519716 |
End bp | 3522289 |
Gene Length | 2574 bp |
Protein Length | 857 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640164577 |
Product | TonB-dependent receptor |
Protein accession | YP_001095092 |
Protein GI | 127513895 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000174041 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAGAC CTCAATATTG GCCCAGCGCC TGCGCTATCG CCATTACCAT TGCGCTAACC CCACATGTTT ATGCGGCCGA CGAAGGCGTC GAGCGCATCG AAGTCACAGG CTCTCGCATT AAACGTACCG ATATCGAAGG CCCATCACCG ATCCAGTCGA TCAACAAAGA CGATATCGCC AACATGGGTT TCGACAACCT ACAACAACTG CTGGAACGCA TGCCAGCCAA CGGCGCGGGC GCCTTCTCGA CCCGAGGTAA CAGCCAGGAC TCTACCGCCA ACGGCGCGGC CTCTATCAGT CTGCGCGGCA TGGGTCCAGA CGCTACTCTG GTACTGATCA ACGGCCGCCG TGTGGCCATC AGCTCATTCG CCGAGGGGAT CACTAACTCC TTCGTCGACA TCAACAATAT TCCTGTATCC GCCATCGAGC GTATCGATAT CCTCAAAGAT GGCGCCTCGG CCATCTATGG TTCAGACGCC ATCGCCGGTG TGGTCAACAT CATTCTGCGT AAAAACTTCG AAGGTATCGA AATCAACCTG GGCTACGGCG AAGCCTCTGG CTCCAGCTAT GACGAACAGA GCGGCTCTAT GCTGTGGGGC ATGCAATCCG ATAAGGGCAG CGCCTCTATT ATTCTCGATT ACTTCAAAAA CAGCACTCTC GCCGCCACCG AGATGGGCCG CTTCGGCACC GCCAACCAGA GCCCATACGG CGGTGAAGAT TTCCGCTCGT CACGTGGCTT CCCAGGCTAC TTCTATGTCG ATGGCGTTAA GACCATAGAC CCTGATTGTC CACCCGACTC GGCCACCGCC AGCGGCAGCT GTCTGTTCGA CTACGGTCCA TACAACCTCA CTATCCCTGC CGCCGAGCGT GTGGGCGCAA TCGCCCAGTT CGACTATCAC CTGAGCGACG AGATGACCGC CTTCTTAGAA GTTGCGGCCC AGCACAACAC CTCTGAGGCC GGCGGCGCGC CGACCCCGCT GGATGAAGAT GCCATGCTGA CGGTTCCAGG CACCCACCCT AACAACCCGT GGGGCAAGGA TATTGAGATA GGTCGTTACC GCACAGTGGA TGCCGGCGCT CGTCGCTGGG ACATAGAATC TGACACCCTA CGTCTGGTTG CCGGTCTACG TGGCAACATA GATGAATGGG ATTGGGAGGT CTCGGCTCAG AAAGGCCGCA GCGAATCGAC CCAGAAGGGT GACAGAACCC AGGGCTGGGT GCGCACCGAC TTCCTGCAAG CCGAGATCGA TGCCGGTAAC TACAACCCAT TTGGCGGCAC CATGAATTCA CAGGATGTGA TCGATCGCAT CACCACCAGC CTGGTTCGTC AGGGTGTGTC ACACCTGACC GCTTATGACG CCAGCATCAC GGGCCCGGCC TTTACCCTGG CGGATCGTGA AGTCATGATG GCGGCGGGCG TCGAGTACCG CGAAGAGGAC GTTAGCGATG TCCCGGATGA TCAATTCCAG CGCGGCCTGA TCTTCGGTAC CGAAGCCGTA TCAGCCCAGG CAGACCGCGA CCAGTACGCG GCCTATGTGG AGTTCTCTAT CCCAGTTACC GACAGCTTCG AGTTGCAACT GGCCGGCCGT TACGATCACT ACAGCGATTT CGGTTCAACC ACCAACCCTA AGGTTGCCTT CCAATGGGGA ATTAGCGATC AGCTGACCGC TCGCGCCTCT TGGGCGACCG GTTTCCGCGC ACCATCTTTG GCACAAATCG GTCTTGGCCC ATCGAGAGAG AGTAGCTTCT TCATCGATAC CTACCGCTGC GCCGCCGACA ACGTCGACTG TACCGCGCTG GACTACAACA CAGAATTTGC CGGTAACTCA GAACTGGACG CCGAAGAGTC AGAAACCTGG AACGCAGGCC TGATCTGGGC ACCTAGCCAG AAGTTTGATA TTGGCTTCGA CGTCTTCAGT ATCACCCAGG ACAACAAGAT CGATAAGCAG CCACTGGGCG AGATCTACCT GGCCAACTGT AACGATCAAA ACAGCACTGT GTGTGAGCGT CTGGCGCCGC AGCCGGGGCA AACTCTGGGC CCAATCAGCC TAATCCACTC AAGCTTCATC AACTTAAGTT CGCAAGAGGT TCAAGGGGTG GACGTTTCCA GCCACTACGG CCTGGAGATG GACCGCTTCG GCGACCTCAA GTTTGGCCTG GAATACAGCT ACCTGCACAA GTTTGAGAAG GACAAGCTGG ATTACACCGG CGAGTACCGC TACCCGCAAC ATCGCTGGTT GCTGACCACT AACTGGACCA TGGATGACTT CGCCGCCAAC ATCAACTTCA GCTACATCGG CGAGTTTGAA GATACGCCAG ATATCGACTT CGACGGCTCA CTCGACTTCG AGGTCAACAA GTCGCGTATG GTCGAGTCGC AACTCTTGGT GGACATGTCC GGTTCATACC GCTTCAACGA CACCTTCAAG TGGACAGTCG GCGTCAACAA CGTAATGGAT GAAGAGCCGC CATTTGCCAT CGGCGACGGC GACACCGACC TCTACGGCTA TGTGATTGCC ACCCATAACC CTATGGGCCG CTACTTCTAC ACCAAGTTGA GCATGAGGTT CTAA
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Protein sequence | MKRPQYWPSA CAIAITIALT PHVYAADEGV ERIEVTGSRI KRTDIEGPSP IQSINKDDIA NMGFDNLQQL LERMPANGAG AFSTRGNSQD STANGAASIS LRGMGPDATL VLINGRRVAI SSFAEGITNS FVDINNIPVS AIERIDILKD GASAIYGSDA IAGVVNIILR KNFEGIEINL GYGEASGSSY DEQSGSMLWG MQSDKGSASI ILDYFKNSTL AATEMGRFGT ANQSPYGGED FRSSRGFPGY FYVDGVKTID PDCPPDSATA SGSCLFDYGP YNLTIPAAER VGAIAQFDYH LSDEMTAFLE VAAQHNTSEA GGAPTPLDED AMLTVPGTHP NNPWGKDIEI GRYRTVDAGA RRWDIESDTL RLVAGLRGNI DEWDWEVSAQ KGRSESTQKG DRTQGWVRTD FLQAEIDAGN YNPFGGTMNS QDVIDRITTS LVRQGVSHLT AYDASITGPA FTLADREVMM AAGVEYREED VSDVPDDQFQ RGLIFGTEAV SAQADRDQYA AYVEFSIPVT DSFELQLAGR YDHYSDFGST TNPKVAFQWG ISDQLTARAS WATGFRAPSL AQIGLGPSRE SSFFIDTYRC AADNVDCTAL DYNTEFAGNS ELDAEESETW NAGLIWAPSQ KFDIGFDVFS ITQDNKIDKQ PLGEIYLANC NDQNSTVCER LAPQPGQTLG PISLIHSSFI NLSSQEVQGV DVSSHYGLEM DRFGDLKFGL EYSYLHKFEK DKLDYTGEYR YPQHRWLLTT NWTMDDFAAN INFSYIGEFE DTPDIDFDGS LDFEVNKSRM VESQLLVDMS GSYRFNDTFK WTVGVNNVMD EEPPFAIGDG DTDLYGYVIA THNPMGRYFY TKLSMRF
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