Gene Shew_2965 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2965 
Symbol 
ID4924059 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp3517568 
End bp3518836 
Gene Length1269 bp 
Protein Length422 aa 
Translation table11 
GC content60% 
IMG OID640164575 
Productputative manganese transporter 
Protein accessionYP_001095090 
Protein GI127513893 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1914] Mn2+ and Fe2+ transporters of the NRAMP family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGAAAACG TTAGTGTAAA TACAACCCAG ACTAGCCTCT GGCTGCAGTG CCGCCGCTTG 
TTAACTGCCA CAGGCCCTGG CCTGCTAATG GCGGCCGCGG CCATCGGCGC ATCGCACCTG
GTGGCCTCGA CCCGCGCCGG CGCCGAGTTT GGCTGGCAGC TGGCCTGGGT GATACTCCTG
GTGAACCTGC TCAAGTATCC CTTCTTTGCC GCAGGGGCCC GCTATACCGC GGCAACCGGT
GAGAGCCTGC TGCACGGCTA TCAGCGCCAA GGACGCGGTT ACCTGCTGCT CTTCTCGCTG
CTCAACGCCC TGGCGGCGGT GGCCAGCACC GCAGGCGTCG CCATGTTAAC TGCCGCGCTG
CTCACCCAGT TTATTCCTCT GCCTATCGAT CTGCTGGCGT TGATCGTCTT GGTCGCCAGC
CTATTGCTCT TGGTACTGGG TCATTATCGG GTGCTGGACA GGGTGACCAA GGTGATCATG
CTCTGCCTGA CGGTGACCAC CCTGAGCGCC GCCGCGCTGG CCTTTAACGC CGAACCTATT
CTGGCGCCTG GCTTCGTGTC GCCTTCCCCC TGGCAGTGGG CTCATGTGGG CTTCCTGGTC
GCCATGATGG GTTGGATGCC GGCGCCTATC GAGGTGAGCT GCTGGAACTC CCTCTGGCTT
TTGGAAAAGC AGAAACAGCA GCGGGTGACG CCTAAGCAGG CGCTGTTCGA TTTTAATCTG
GGCTTCATCA CCACGGCGAT ACTGGCCGTG GTGTTTCTCT CGCTCGGTGC CATGGTGATG
CACGGCTCGG GCGTACACTT CTCGCCTTCC GGGGCCAAGT TTGCCGAGCA GTTGATTCAG
CTCTATAGCC AGGTGCTGGG GGAGGGGAGC CGCTATCTGA TTGCCCTGGT GGCCCTGCTC
TGTATCTTCA GCACCACGGT TACCGTGGTC GATGGCTACA GCCGTACCCT TATCCTGAGT
GTGCAGCTAC TGCGAAAGGA TGAGGTCAGC GAGCGCGGCC TCAACCTGAC CATGTTGGCG
GTGAGCCTGC TGGGGCTGGG GATCATACTC TTCTTCAAGG GGGCATTGCT GCCACTGCTG
CAGTTTGTGA TGACCCTGGC CTTCATGACC ACCATCATCT TCGCCTGGCT CAACTATCGC
CTGATGACCA GTGACAATCT GGCGCCCGGC GATCGCTACG GCGTGGCCAT GCGGCTGCTT
TCTTGGATCG GCATGACTTA TCTGCTAGGG TTTGCGGCTT TATTTGTCTA CTGGAAGTTT
GTCGGTTAA
 
Protein sequence
MENVSVNTTQ TSLWLQCRRL LTATGPGLLM AAAAIGASHL VASTRAGAEF GWQLAWVILL 
VNLLKYPFFA AGARYTAATG ESLLHGYQRQ GRGYLLLFSL LNALAAVAST AGVAMLTAAL
LTQFIPLPID LLALIVLVAS LLLLVLGHYR VLDRVTKVIM LCLTVTTLSA AALAFNAEPI
LAPGFVSPSP WQWAHVGFLV AMMGWMPAPI EVSCWNSLWL LEKQKQQRVT PKQALFDFNL
GFITTAILAV VFLSLGAMVM HGSGVHFSPS GAKFAEQLIQ LYSQVLGEGS RYLIALVALL
CIFSTTVTVV DGYSRTLILS VQLLRKDEVS ERGLNLTMLA VSLLGLGIIL FFKGALLPLL
QFVMTLAFMT TIIFAWLNYR LMTSDNLAPG DRYGVAMRLL SWIGMTYLLG FAALFVYWKF
VG