| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2941 |
|---|
| Symbol | lipB |
|---|
| ID | 4922143 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 3480360 |
|---|
| End bp | 3481016 |
|---|
| Gene Length | 657 bp |
|---|
| Protein Length | 218 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640164546 |
|---|
| Product | lipoate-protein ligase B |
|---|
| Protein accession | YP_001095066 |
|---|
| Protein GI | 127513869 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0321] Lipoate-protein ligase B |
|---|
| TIGRFAM ID | [TIGR00214] lipoate-protein ligase B |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.000188229 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0212336 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCCCTTGA AAGATACGGT TTTACATATT CGTCATCTTG GTCGCCAGGA TTACGAGTCG
GTATGGCACG CCATGCAGGA ATATACCGAT AATCGCGATG AAACGAGCCG AGATGAGCTT
TGGATAGTCG AACATCCTCC GGTGTTCACG CAGGGCCAGG CAGGCAAGAG TGAGCATATT
CTCAACCCCG GTGATATCCC CGTCATTCAA GTCGACCGTG GTGGCCAAGT GACCTACCAT
GGCCCAGGGC AGTTAGTCGC CTACCCACTA CTGGACATCA AGCGCCTCAA AATCGGCGTT
CGCCAACTGG TGACCGACAT AGAGCAGAGT ATCGTCAAGA TGCTCGCCCT CTATGGTATC
GAAGCCTATC CTAAGGCCGA TGCTCCTGGC GTCTATGTCG AGGAGCGCAA GATAGCCTCT
CTGGGTCTGC GGATCCGTAA AGGCTGCTCC TTCCACGGCC TGGCACTAAA CGTCGATATG
GATATGTCCC CCTTTCAGCG CATCAACCCC TGCGGTTATG CCGGACTAGA GATGGCTCAA
TGTAAGCCGC TCAAGGGGCC ACAAAGCGTC GAAGAAGCCG GCGAGAAACT GATACAAACC
TTTAGCCAAG AATTGGGCTA TCAACATCTA GAACATCATC AAGGGTTAAC AGACTAA
|
|---|
| Protein sequence | MPLKDTVLHI RHLGRQDYES VWHAMQEYTD NRDETSRDEL WIVEHPPVFT QGQAGKSEHI
LNPGDIPVIQ VDRGGQVTYH GPGQLVAYPL LDIKRLKIGV RQLVTDIEQS IVKMLALYGI
EAYPKADAPG VYVEERKIAS LGLRIRKGCS FHGLALNVDM DMSPFQRINP CGYAGLEMAQ
CKPLKGPQSV EEAGEKLIQT FSQELGYQHL EHHQGLTD
|
|---|
| |