| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2931 |
|---|
| Symbol | |
|---|
| ID | 4922133 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 3471081 |
|---|
| End bp | 3472112 |
|---|
| Gene Length | 1032 bp |
|---|
| Protein Length | 343 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640164536 |
|---|
| Product | DNA polymerase III, delta subunit |
|---|
| Protein accession | YP_001095056 |
|---|
| Protein GI | 127513859 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1466] DNA polymerase III, delta subunit |
|---|
| TIGRFAM ID | [TIGR01128] DNA polymerase III, delta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.118412 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00725914 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGTCT ACCCGGACCA GCTCGCCAAG CAGCTCTCGC CGCTCAAGCC CTGTTATCTC
ATCTTTGGTG ATGACCCCTG GCTGTGTGAA ACCAGCAAGC GGGCGATCTT CGATCAGGCC
AAGCGAGAAG GTTTCGAGGA GCGCATAGTG CTCACTCAGG AGACAGGCTT TAACTGGCGC
GAATTGCAGG ATGAGTGGAA TACCATGAGC CTGTTCGCCA GTCGCCGCAT CATAGAGCTG
CACCTGCCCC AGGCCAAACC CGGCAGCGAG GGCAGTAGCC AGCTACAGAG TCTGATGCAG
CAGGTAAATC CGGATATTCT GTTGGTGATC ACAGGGCCAA AGCTTGCCAG CGAACAGACC
AAGTCGAAAT GGTTTAAGCA GCTGGATGAC AAAGGGGTTT ATATCCCCTG CGCCACGCCA
GAAGGGCCAC AGTTTCAGCG CTGGTTACAG ACCCGCATTC GCGAGGCAGG GCTAAACCTG
ACTCTGGACG CCCAGCAGCT GTTGCTGAGT CTGTATGAAG GCAACCTGCT GGCGGCGGAT
CAGGCGATAC AACTGCTGGT GCTACTCAGC CCCAGCAGCC AGATCACCAG CGAGCAACTG
CAAAGCTACT TCGAAGATCA GTCCCGTTTC AGCGTGTTTC AGCTGGCCGA TTGCCTGCTG
GCTAATCAAC AGGAGAAGGC CCAGCATATC CTGGCCCAGC TCCAGGCAGA GGGCACAGCC
CTGCCGATAC TGCTGTGGGG CCAGTTTAAG GAGCTGACCA CACTGTTACA GCTCAAGCAG
GCCCAGGAGG CGGGAACGCC GCTGCAGAGT CTGTGGAGTC AGTTCAGGAT CTGGGACAAG
CGCAAGGGGC TGTATCAGGG CGCGCTGTCT CGCCTGAGTC TAAGTCAGAT AGAGACTGCC
CTGGCCAGCG CCTCGAAGAT CGAGCTAAAG CTCAAGCAGC AGGGGGCTGA GGATTGGACC
GCCATGAGTC ACCTTTGCCT GCTGTACGAT CCCAAGGCTC ACAGCCATCT TAGCCATATC
GAACTCGGCT AG
|
|---|
| Protein sequence | MRVYPDQLAK QLSPLKPCYL IFGDDPWLCE TSKRAIFDQA KREGFEERIV LTQETGFNWR
ELQDEWNTMS LFASRRIIEL HLPQAKPGSE GSSQLQSLMQ QVNPDILLVI TGPKLASEQT
KSKWFKQLDD KGVYIPCATP EGPQFQRWLQ TRIREAGLNL TLDAQQLLLS LYEGNLLAAD
QAIQLLVLLS PSSQITSEQL QSYFEDQSRF SVFQLADCLL ANQQEKAQHI LAQLQAEGTA
LPILLWGQFK ELTTLLQLKQ AQEAGTPLQS LWSQFRIWDK RKGLYQGALS RLSLSQIETA
LASASKIELK LKQQGAEDWT AMSHLCLLYD PKAHSHLSHI ELG
|
|---|
| |