| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2923 |
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| Symbol | |
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| ID | 4921183 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3461443 |
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| End bp | 3462867 |
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| Gene Length | 1425 bp |
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| Protein Length | 474 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640164528 |
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| Product | (dimethylallyl)adenosine tRNA methylthiotransferase |
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| Protein accession | YP_001095048 |
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| Protein GI | 127513851 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0621] 2-methylthioadenine synthetase |
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| TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family
[TIGR01574] tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0269017 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0084702 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGAGTAAGA AACTCCACAT TAAAACCTGG GGCTGTCAGA TGAATGAGTA TGACTCATCA
AAGATGGCCG ACCTGCTCGA CGAATATCAA GGCTACACCT TGACCGAAGA GGCCGAGGAA
GCAGATGTAC TGCTACTCAA TACCTGCTCT ATTCGCGAAA AAGCACAGGA AAAAGTATTC
CACCAGCTGG GTCGCTGGAA GACGCTAAAA GACAAGAACC CTAACCTTAT CATAGGTGTA
GGTGGTTGCG TGGCGTCTCA AGAAGGTAAG GCAATCAAAG ACAGAGCTCA GTGTGTCGAC
CTGATCTTCG GCCCACAGAC GCTACATCGT CTGCCAGAGA TGATCGAACA GATCCAGCAA
GGCGGCAAGG CCGTCATCGA CGTCAGCTTC CCCGAGATTG AGAAGTTCGA CCGCCTGCCA
GAGCCGCGCG CCGAGGGCCC GAGCGCCTTC GTCTCCATCA TGGAAGGCTG TAGCAAATAT
TGCTCTTTCT GCGTGGTGCC ATACACACGC GGTGAAGAGG TGAGCCGTCC GGTGGACGAC
GTGATCCTAG AGATCGCCCA GCTCGCCGAG CAAGGCGTGC GTGAGGTTAA CCTGCTAGGC
CAGAACGTGA ACGCCTATCG CGGCGCGACC CACGATGACG ATATCTGTAC CTTCGCAGAG
CTGCTACGTT ATGTGGCCGC CATCGACGGT ATCGATCGTA TTCGTTTCAC TACCAGCCAC
CCGATCGAGT TTACCCAAGA CATCATAGAC GTGTATGAAG ACACGCCTGA GTTGGTGAGC
TTCCTGCATC TGCCGGTGCA ATCTGGTTCA GATCTGATCC TCACCCAGAT GAAGCGTGGC
CACATGGCTA TCGAATACAA GTCGATCATC CGTCGTCTAC GTAAGGCCAG ACCCGACATT
CAGATCAGCT CTGACTTCAT CGTCGGCTTC CCTGGCGAGT CTAAGCAGGA CTTTGCCGAT
ACCATGAAGC TGATTGAAGA TGTGCAGTTC GACCACAGCT TCAGCTTTAT CTACAGCGCA
CGCCCGGGTA CACCGGCATC GGATCTACCC GATGATGTCT CGCTGGATGA GAAGAAGGAG
CGCCTGGCGA TTCTGCAAGA CAGGATCACC CAGCAGGCGA TGCGCTACAG CCGTCAGATG
CTAGGCACAG TGCAGCGTAT CCTGGTAGAA GGCCCATCGG TTAAGAACCC TATGGAGCTG
CGTGGCCGCA CCGAAAACAA CCGCGTGGTG AACTTCGAAG CCGATCCTAA GCACATAGGT
AGCTTCGTCG ACGTCGAGAT CGTCGATGTG TTTACCAACT CGCTGCGTGG CAAATTCATT
CGCGGCGAAG ATGAGATGGA CCTGCGCCGT GACCTGCGTC CATCAGACAT CCTGGCCAAG
CATAAGAAAG ATGACGATCT TGGGGTGACT CAGTTTATCC CTTAG
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| Protein sequence | MSKKLHIKTW GCQMNEYDSS KMADLLDEYQ GYTLTEEAEE ADVLLLNTCS IREKAQEKVF
HQLGRWKTLK DKNPNLIIGV GGCVASQEGK AIKDRAQCVD LIFGPQTLHR LPEMIEQIQQ
GGKAVIDVSF PEIEKFDRLP EPRAEGPSAF VSIMEGCSKY CSFCVVPYTR GEEVSRPVDD
VILEIAQLAE QGVREVNLLG QNVNAYRGAT HDDDICTFAE LLRYVAAIDG IDRIRFTTSH
PIEFTQDIID VYEDTPELVS FLHLPVQSGS DLILTQMKRG HMAIEYKSII RRLRKARPDI
QISSDFIVGF PGESKQDFAD TMKLIEDVQF DHSFSFIYSA RPGTPASDLP DDVSLDEKKE
RLAILQDRIT QQAMRYSRQM LGTVQRILVE GPSVKNPMEL RGRTENNRVV NFEADPKHIG
SFVDVEIVDV FTNSLRGKFI RGEDEMDLRR DLRPSDILAK HKKDDDLGVT QFIP
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