| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2914 |
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| Symbol | |
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| ID | 4921174 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3452752 |
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| End bp | 3453402 |
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| Gene Length | 651 bp |
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| Protein Length | 216 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640164511 |
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| Product | outer membrane lipoprotein LolB |
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| Protein accession | YP_001095039 |
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| Protein GI | 127513842 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3017] Outer membrane lipoprotein involved in outer membrane biogenesis |
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| TIGRFAM ID | [TIGR00548] outer membrane lipoprotein LolB |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00000324286 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.441694 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAATAATT TGAACTACTT CACAAAAATT TCGGCAAGCT GTGCGGCCTT AGCGCTAATG
ACCCTCGCCG GCTGTGCCTC CCACAAACCG ATCGACTACG CCCCCACACA GGTAGAAAGT
GCTAACCAGG CAGAGGCCTG GGAGCTGCAG GGCAAGTTGG CGGTGCGCAC CCCAGAAGAT
AAATTCAGCA CCAACCTCTA CTGGTTCCAT ACCCAGACCA ATGACGACCT GACCCTGACC
ACTATGCTGG GCACTACAGT CATGACCCTT AACAAGACCC CTAGCCAGGC GAGCCTGCAG
ATAGAAGACA AGGTGTATCA GGACAGCGAC GCCGAAGAGC TGCTCAGGCG CCTCACCGGC
TGGTCGATAC CGGTCGACAC CCTGCCCCTG TGGATCACGG GGCAGGTTTC CGCTCAGGAT
GAGGTGGTCG CCGTCGACGA GCAAGGTCGC CCCAAGGAGG TACTCAACCA CACAGGCAGT
AGCCCCTGGC ACGTCAGCTT CAACAGTTGG CAAGAGCAGA GCGGCGCCGA GCTGCCGAGA
CTGCTGCAGC TAGAGCGCGA CGACATTCGT TTAAAGCTAC AGGTCAGCCA GTGGCAGGCA
CTGACACCCA AGCGCGCATC ACAACCGGAA TCGACAGATG ACAAGCAATA G
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| Protein sequence | MNNLNYFTKI SASCAALALM TLAGCASHKP IDYAPTQVES ANQAEAWELQ GKLAVRTPED
KFSTNLYWFH TQTNDDLTLT TMLGTTVMTL NKTPSQASLQ IEDKVYQDSD AEELLRRLTG
WSIPVDTLPL WITGQVSAQD EVVAVDEQGR PKEVLNHTGS SPWHVSFNSW QEQSGAELPR
LLQLERDDIR LKLQVSQWQA LTPKRASQPE STDDKQ
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