Gene Shew_2912 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2912 
SymbolprfA 
ID4921373 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand- 
Start bp3450083 
End bp3451168 
Gene Length1086 bp 
Protein Length361 aa 
Translation table11 
GC content55% 
IMG OID640164509 
Productpeptide chain release factor 1 
Protein accessionYP_001095037 
Protein GI127513840 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0216] Protein chain release factor A 
TIGRFAM ID[TIGR00019] peptide chain release factor 1 


Plasmid Coverage information

Num covering plasmid clones7 
Plasmid unclonability p-value0.0107492 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.707414 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGGACA GTGTTATTCG CAAGCTCGAA GGCTTGCTTG AGCGTAATGA AGAGGTTTTG 
GCGCTGCTGA GTGATGCGGA AATCATCGCC GATCAGGAGC GTTTTCGCGC TCTGTCCAAA 
GAGTATTCTC AACTCGAAGA TGTGGTAAAG AGCTTCAAGG CCTACCGCCA GGCCGAAGAA 
GATCTTGCCT CGGCGCAGGA GATGCTCGCC GAAGATGACG CCGATCTGAA AGAGATGGCG 
CAAGAAGAGA TTAAAGAAGC CAAGGCGACC CTGGATGTCT TGGAAGGCGA GCTGCAGATC 
CTGCTGCTGC CAAAAGATCC TAAAGATGAC AACAACGCCT TCCTCGAGAT CCGCGCCGGT 
GCCGGTGGTG ACGAGGCGGC TATCTTTGCC GGTGACCTGT TCCGCATGTA CAGTCGCTAC 
TGCGAGGCAA ACCGCTGGCA GATGGAGATC ATGAACGCCA ACGAAGGCGA ACATGGTGGC 
TTCAAAGAGA TCATCGTTAA AGTGTCAGGC GATGGCGTCT ATGGCAAGCT CAAGTTCGAG 
TCGGGCGGAC ACCGAGTACA GCGCGTGCCT GAAACAGAAT CTCAAGGACG TGTGCATACC 
TCAGCCTGTA CCGTGGTGGT AATGCCTGAG ATCCCAGAAG CCGAAGCGAT CGAAATCAAT 
CCTGCCGATC TAAAGGTCGA CACCTTCCGC GCCTCGGGTG CCGGTGGTCA GCACGTAAAC 
AAGACAGATT CAGCCATCCG TATTACCCAT ATTCCTTCGG GTATCGTGGT GGAGTGTCAG 
GATCAGCGCT CGCAGCATAA AAACCGCGCC CAGGCGATGA GCGTCTTGGC CGCCCGTATT 
CAGGCGGTGG AAGATGAGAA GCGCCGCAGC GAAGAGGAAT CGACACGTCG TAACCTGGTT 
GCCAGTGGTG ACCGCTCGGA GCGTGTGCGT ACCTATAACT TCCCTCAGGG ACGTGTGAGC 
GAGCACAGAA TCAACCTGAC TCTCTATCGC CTCAGCGAAG TGATGGAAGG CGACCTCGAT 
GCCATCCTCG GCCCCTTGAT GCAGGAAAAC CAAGCCGACC TGTTAGCAGC CCTTTCCGAA 
GGTTAA
 
Protein sequence
MKDSVIRKLE GLLERNEEVL ALLSDAEIIA DQERFRALSK EYSQLEDVVK SFKAYRQAEE 
DLASAQEMLA EDDADLKEMA QEEIKEAKAT LDVLEGELQI LLLPKDPKDD NNAFLEIRAG 
AGGDEAAIFA GDLFRMYSRY CEANRWQMEI MNANEGEHGG FKEIIVKVSG DGVYGKLKFE 
SGGHRVQRVP ETESQGRVHT SACTVVVMPE IPEAEAIEIN PADLKVDTFR ASGAGGQHVN 
KTDSAIRITH IPSGIVVECQ DQRSQHKNRA QAMSVLAARI QAVEDEKRRS EEESTRRNLV 
ASGDRSERVR TYNFPQGRVS EHRINLTLYR LSEVMEGDLD AILGPLMQEN QADLLAALSE 
G