| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2892 |
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| Symbol | |
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| ID | 4921821 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3430301 |
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| End bp | 3431719 |
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| Gene Length | 1419 bp |
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| Protein Length | 472 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640164489 |
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| Product | major facilitator transporter |
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| Protein accession | YP_001095017 |
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| Protein GI | 127513820 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR00901] AmpG-related permease |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0730175 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | TTGATTGCAT CCCGAGTTTC CCGATTGCGA GACGCCCTCA CCATTTATTT CCACAAGCGG
GTATTGATTC TGCTGTTTCT CGGCTTCTCC GCCGGCCTGC CCTTGATGCT GGTGTTCTCC
ACCCTCTCCT TCTGGCTGCG GGAAGCAGGC ATAGATCGCA CCGCCATCGG CTACTTCAGC
TGGATAGCCC TCGCCTATGG CTTTAAGTGG GCCTGGTCGC CTCTGGTGGA TCGCATGTCG
CTGCCCTTCT TCACCCAAAT ATTGGGACGG CGCCGCGGCT GGATGCTCTT CGCCCAAATG
CTGTTGGTGC TCGCCATCTT AGGCATGAGC CAGAGTGATC CCTTGGCCGA CCTGGAGCGC
CTGGCGCTGT TCGCCCTCAT GGTGGCCTTC GCCTCGGCCA CCCAAGATAT TGTTATCGAT
GCCTTTCGTA TCGAATCGGC GCCGCAGAAG ATGCAGGCCG CCCTCGCCGC CGCCTATCAG
GTGGGCTATC GTAGCGCCAT GATTGTCGCC ACCGCCGGCG CCCTGACCAT AGCCGCCTGG
GTCGATCCCA ATAGCGAGAG CTATGATCTC GCCTCCTGGC AGACTGCTTA CCTGGTCATG
GCTGGCCTGA TGTTTATCGG TATCTTCACC ACCCTATTGA GCAGCGAGCC CAAGGTCGAG
GCCAAGGAGG CGGACCAGAT AGAATCAGAC CTGAAGCAGT GCCTATCAGA GCGCTACCCC
AGGCCCGTGG CTGCGGCGGC CTCCTGGCTC TATACCGCCA GCATACTGCC CTTCATCGAT
TTCTTTAAGC GCTATGGGCG TAGCGCCATA CTGATCCTGC TGCTGATCTC CTGCTACCGG
ATCTCAGATA TCGTCATGGG GATCATGGCC AACGTCTTCT ATGTGGACAT GGGCTTCTCT
AAGACGGAAA TAGCCACCCT CAGTAAGGTC TACGGCCTGA TCATGACTTT AGTGGGAGCA
GGCGCCGGCG GCATGCTGCT GGCCCGTTAC GGCACCATGA AGATCCTCTT TTTGGGCGCC
TTCATGGTGG CGGTCACCAA CCTACTCTTC GCCTATCAGG CGATGATCGG CTACAACCTA
GAGCTATTGA CTGTGGTGAT CTCCATAGAC AACTTCAGCG CCGGCGTCGC CACCGCGGCC
TTTATCGCCT ACCTCTCCAG CCTGACCAGC AGTGGCTACA GCGCGACTCA GTATGCCCTG
CTCTCCTCCA TCATGCTGCT GTTTCCCAAG TTTGTGGCGG GCTTCTCGGG CCAATATATC
GATGCCTACG GCTATGTGAA CTTCTTCGTC GCCGCCAGCG TCATCGGCTT CCCTGTGCTG
GGGCTGATTG TCTTGGTGCA GAAATACGCC CCCCATCCCA ATGGCGACGA GCAGGCCGAG
TCTCTGGACT CATCTAATGG GCAGCAGGCG AGAGACTAG
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| Protein sequence | MIASRVSRLR DALTIYFHKR VLILLFLGFS AGLPLMLVFS TLSFWLREAG IDRTAIGYFS
WIALAYGFKW AWSPLVDRMS LPFFTQILGR RRGWMLFAQM LLVLAILGMS QSDPLADLER
LALFALMVAF ASATQDIVID AFRIESAPQK MQAALAAAYQ VGYRSAMIVA TAGALTIAAW
VDPNSESYDL ASWQTAYLVM AGLMFIGIFT TLLSSEPKVE AKEADQIESD LKQCLSERYP
RPVAAAASWL YTASILPFID FFKRYGRSAI LILLLISCYR ISDIVMGIMA NVFYVDMGFS
KTEIATLSKV YGLIMTLVGA GAGGMLLARY GTMKILFLGA FMVAVTNLLF AYQAMIGYNL
ELLTVVISID NFSAGVATAA FIAYLSSLTS SGYSATQYAL LSSIMLLFPK FVAGFSGQYI
DAYGYVNFFV AASVIGFPVL GLIVLVQKYA PHPNGDEQAE SLDSSNGQQA RD
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