| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2875 |
|---|
| Symbol | |
|---|
| ID | 4921847 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 3414706 |
|---|
| End bp | 3415722 |
|---|
| Gene Length | 1017 bp |
|---|
| Protein Length | 338 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640164472 |
|---|
| Product | ApbE family lipoprotein |
|---|
| Protein accession | YP_001095000 |
|---|
| Protein GI | 127513803 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1477] Membrane-associated lipoprotein involved in thiamine biosynthesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTATAAGA CCTTTATCAA GGGGTTAGTC CTGGCGGGAC TAGCCTTTTT TATTTCGGCC
TGTAGCCAAC CTGTCAAGAT GATCTCCATG TCTGGGCAGA CCATGGGCAC CACCTACCAC
ATCAAATTTG TCGGCGACAA GCAGATGCCC GACGAGCAAC TGCTGCAGGC GGAGATCGAC
CTCGCGCTTG AGCAGGTGAA CGATCAGATG TCCACCTATC GCAAAGACTC AGAGCTGTCG
CGCTTCAATC AGATGACACT CGAATCTAGC CTGGCGGTAT CCCCCGATAC GGCCAAGGTA
GTGCAGACGG GTATCGATCT CTATCGCAAG ACAGATGGCG CCCTGGATAT CACCCTGGGC
CCGCTGGTAA ACCTCTGGGG CTTCGGTCCC GACAAGCGTC CGACTCGCGT GCCAAGCGCC
GAGCTGATCG CCGAGACCAA GGCCAAGACG GGTATCGAGT ATCTTAAGGT CGATGGCCTT
AAGCTGAGCA AGACCAATCC TGCTTTGTAT GTCGACCTTT CCTCCATCGC CAAGGGCTTT
GGGGTCGATA AGGTGGCCAA GCTGCTGAGC AAGTATCAGC CCAAAGGTTA TCTGGTGGAG
ATAGGAGGCG AGATCAGTCT CTTCGGCGTC AAGGCCGACG ACAGCCCTTG GGTGATCGCC
ATAGAGCAGC CCGATGAGGA TGAGCGCGTG GTGCAGCAGC TGCTGGAACC TGGCAACATC
GCCATGGCGA CTTCGGGCGA CTATCGCAAC TACTATGAGG AGGAGGGGCA ACGCTTCACT
CATATTATCG ACCCGCGCAA CGGCTACCCG ATCGACCATA AGCTTGCCTC TGTGACCGTG
CTGGCTAAGG AGAGCATGAT CGCCGACGGT TACGCCACCG CCATGATGGT GCTGGGCACA
GAGGCCTCGC TGGCGCTGGC CGAACGTGAG CATCTGGCCA TCATGTTGAT CGAGAAGCAA
GCGCAAGGTT TCAAGGTCTA CTATAGCGAT GCCTTTAAGC CCTACGTGGG TTTGTGA
|
|---|
| Protein sequence | MYKTFIKGLV LAGLAFFISA CSQPVKMISM SGQTMGTTYH IKFVGDKQMP DEQLLQAEID
LALEQVNDQM STYRKDSELS RFNQMTLESS LAVSPDTAKV VQTGIDLYRK TDGALDITLG
PLVNLWGFGP DKRPTRVPSA ELIAETKAKT GIEYLKVDGL KLSKTNPALY VDLSSIAKGF
GVDKVAKLLS KYQPKGYLVE IGGEISLFGV KADDSPWVIA IEQPDEDERV VQQLLEPGNI
AMATSGDYRN YYEEEGQRFT HIIDPRNGYP IDHKLASVTV LAKESMIADG YATAMMVLGT
EASLALAERE HLAIMLIEKQ AQGFKVYYSD AFKPYVGL
|
|---|
| |