| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2835 |
|---|
| Symbol | rrmJ |
|---|
| ID | 4922342 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 3361002 |
|---|
| End bp | 3361631 |
|---|
| Gene Length | 630 bp |
|---|
| Protein Length | 209 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640164432 |
|---|
| Product | 23S rRNA methyltransferase J |
|---|
| Protein accession | YP_001094960 |
|---|
| Protein GI | 127513763 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0293] 23S rRNA methylase |
|---|
| TIGRFAM ID | [TIGR00438] cell division protein FtsJ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00000204362 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0109871 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGGTA AAAAACGAAC AGCCAGTTCC ACCCGTTGGA TGCAGGAACA TTTCGATGAT
CATTATGTTA AGTTGTCGCA GAAACGGGGA TTGCGTTCGC GCGCTGCGTT TAAAATAGAA
GAGATACAAC AAAAGGATAA GCTGATCCGC CCCGGCATGA CAGTGGTGGA CCTCGGGGCT
GCCCCAGGGG GCTGGTCGCA GATTGCCGTC AAGCTGGCGG GAGAGACGGG TAAGGTTATC
GCCTGCGATA TCCTGCCTAT GGACCCCATC GTCGGCGTCG ATTTCCTGCA AGGTGATTTT
CGCGAGGAGA AGGTGCTTAA CGCCTTACTC GAGCGGGTCG GCGATGCTAA AGTCGATGTT
GTGTTGTCGG ATATGGCACC TAATATGAGT GGTACGGGCG GTGTAGATCA GCCGCGCGCC
ATGTATTTGG TGGAGCTGGC ACTGGATATG TGTCATCAGG TGTTGGCACC AAATGGTAGT
TTTGCTGTCA AAGTCTTTCA GGGGGAGGGC TTTGATGAGT ATATGAAGGC GGTGAGAGAG
GCATTTACCA CCGTTAAAAC ACGTAAGCCA GACTCGTCGC GACCGCGTTC GCGTGAAGTC
TATCTTGTGG CGACGGGTTA CAAGTTGTAG
|
|---|
| Protein sequence | MSGKKRTASS TRWMQEHFDD HYVKLSQKRG LRSRAAFKIE EIQQKDKLIR PGMTVVDLGA
APGGWSQIAV KLAGETGKVI ACDILPMDPI VGVDFLQGDF REEKVLNALL ERVGDAKVDV
VLSDMAPNMS GTGGVDQPRA MYLVELALDM CHQVLAPNGS FAVKVFQGEG FDEYMKAVRE
AFTTVKTRKP DSSRPRSREV YLVATGYKL
|
|---|
| |