Gene Shew_2834 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2834 
Symbol 
ID4922341 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp3358989 
End bp3360956 
Gene Length1968 bp 
Protein Length655 aa 
Translation table11 
GC content54% 
IMG OID640164431 
ProductATP-dependent metalloprotease FtsH 
Protein accessionYP_001094959 
Protein GI127513762 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0465] ATP-dependent Zn proteases 
TIGRFAM ID[TIGR01241] ATP-dependent metalloprotease FtsH 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000517945 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0155634 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAGTGATA TGGCAAAAAA TTTAATTCTC TGGGTTGTCA TCGCCGTCGT GCTGATGTCA 
GTGTTTCAGG GCTACTCCCC CTCTTCATCG AACTCCATGA AGATGGATTA TTCAACTTTC
TTGGATGATG TTCGCTCCGG CCAGATCAAC ACCGTCGAGG TGAAGAGTGA CCAGCGTACC
ATCGAGGGTA CCAAAAGAAC CGGGGAAAAA TTTACCACTA TCATGCCTAT GTATGATCAG
GATCTGATCA ACGATCTTGA CCGTAAGGGT GTGACCATGA AAGGTCAGGA AGCCGAAGAG
TCAGGTTTCC TCACACAGAT CTTCATCTCT TGGTTCCCTA TGCTGTTGCT CATCGGGGTA
TGGATCTTCT TCATGCGCCA GATGCAGGGC GGTGGCGGTA AAGGCGCCAT GTCTTTCGGT
AAGAGTAAAG CCAAGCTGAT GAGCGAAGAT CAGATCAAGA CCACCTTCGG TGACGTCGCC
GGTTGCGACG AGGCCAAGGA AGATGTCAAA GAGCTGGTCG ATTACCTCAA AGAGCCGACT
AAGTTCCAGA AACTGGGTGG CCGTATACCT ACCGGTGTGC TCCTGGTTGG TCCTCCAGGT
ACGGGTAAGA CTCTACTTGC CAAGGCGATT GCCGGTGAGG CCAAGGTGCC TTTCTTCACA
ATTTCCGGTT CTGACTTCGT TGAGATGTTT GTCGGTGTCG GTGCCTCACG TGTTCGTGAC
ATGTTTGAGC AGGCGAAGAA GTCTGCGCCT TGTATCATCT TCATCGATGA GATCGATGCC
GTAGGTCGCC AGCGTGGCGC GGGTGTCGGT GGTGGTCACG ACGAGCGTGA GCAGACCCTT
AACCAGATGC TGGTTGAGAT GGATGGTTTC GAGGGTAACG AAGGTATCAT CGTTATCGCC
GCGACTAACC GTCCAGACGT ATTGGATGCT GCCTTACTGC GTCCGGGTCG TTTCGATCGT
CAAGTGGTGG TTGGCCTGCC AGACGTACGT GGTCGTGAGC AGATCCTTAA GGTGCATATG
CGTAAGGTGC CGCTGGCCGA TGACGTTAAG GCGAGCGTGA TTGCCCGTGG TACACCAGGC
TTCTCTGGTG CCGATCTGGC TAACCTGGTA AACGAAGCGG CGCTGTTTGC TGCCCGTGGT
AATCGCCGCG TGGTGGGCAT GGAAGAGTTC GAGAGCGCCA AAGACAAGAT CATGATGGGC
GCCGAGCGCC GCACCATGGT AATGTCTGAA GAAGAGAAAG AGATGACCGC CTATCACGAA
GCGGGTCACG CTATCGTTGG CTGTCTGGTA CCCGAGCACG ATCCTGTGCA CAAGGTGACT
ATCATTCCTC GTGGCCGCGC CCTGGGTGTG ACCTTCTTCC TACCTGAGGC CGATGCCATC
AGCCAGAGCC GTCGTAAGCT CGAGAGTCAG ATCTCTGTGG CCTATGGTGG ACGTATCGCC
GAGGAGTTGA TCTATGGTAG CGAGCGTGTC TCTACCGGTG CTTCTCAAGA CATCAAGTAT
GCGACTACGA TTGCGCGCAA CATGGTGACC CAATGGGGCT TCTCGGACAA GCTAGGTCCG
GTATTGTACG CCGAAGATGA GGGCGAAGTG TTCCTCGGCC GTAGCATGGC TAAGGCGCAG
CATATGTCGG ATGAGACGGC GTCGATTATC GATCTCGAAG TGAAACAGCT GATCGATAAT
AACTATGGAC GCGCGCATCA GTTCCTGACA GATAACATGG ATATCCTTCA CGCGATGAAA
GATGCGCTGA TGAAGTACGA GACCATAGAT GCGACTCAGA TTGACGACCT GATGGCCCGT
CGTGAGGTGC GTGCACCGGC CGATTGGAAC ATGGATGAGA ATGGTTCAAA CGGCAAGGGT
AATGGCGGTC GTGGTGAGGC GGTTACATCG CCAGAGCCAA GCGAAGCGCC TGCCGCCGAG
CCTGCGAGTG AGCCAAAAGA AGGTGATGAA TCACCTGTAG TTAAGTAA
 
Protein sequence
MSDMAKNLIL WVVIAVVLMS VFQGYSPSSS NSMKMDYSTF LDDVRSGQIN TVEVKSDQRT 
IEGTKRTGEK FTTIMPMYDQ DLINDLDRKG VTMKGQEAEE SGFLTQIFIS WFPMLLLIGV
WIFFMRQMQG GGGKGAMSFG KSKAKLMSED QIKTTFGDVA GCDEAKEDVK ELVDYLKEPT
KFQKLGGRIP TGVLLVGPPG TGKTLLAKAI AGEAKVPFFT ISGSDFVEMF VGVGASRVRD
MFEQAKKSAP CIIFIDEIDA VGRQRGAGVG GGHDEREQTL NQMLVEMDGF EGNEGIIVIA
ATNRPDVLDA ALLRPGRFDR QVVVGLPDVR GREQILKVHM RKVPLADDVK ASVIARGTPG
FSGADLANLV NEAALFAARG NRRVVGMEEF ESAKDKIMMG AERRTMVMSE EEKEMTAYHE
AGHAIVGCLV PEHDPVHKVT IIPRGRALGV TFFLPEADAI SQSRRKLESQ ISVAYGGRIA
EELIYGSERV STGASQDIKY ATTIARNMVT QWGFSDKLGP VLYAEDEGEV FLGRSMAKAQ
HMSDETASII DLEVKQLIDN NYGRAHQFLT DNMDILHAMK DALMKYETID ATQIDDLMAR
REVRAPADWN MDENGSNGKG NGGRGEAVTS PEPSEAPAAE PASEPKEGDE SPVVK