Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2834 |
Symbol | |
ID | 4922341 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 3358989 |
End bp | 3360956 |
Gene Length | 1968 bp |
Protein Length | 655 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 640164431 |
Product | ATP-dependent metalloprotease FtsH |
Protein accession | YP_001094959 |
Protein GI | 127513762 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0465] ATP-dependent Zn proteases |
TIGRFAM ID | [TIGR01241] ATP-dependent metalloprotease FtsH |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.00000517945 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0155634 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGAGTGATA TGGCAAAAAA TTTAATTCTC TGGGTTGTCA TCGCCGTCGT GCTGATGTCA GTGTTTCAGG GCTACTCCCC CTCTTCATCG AACTCCATGA AGATGGATTA TTCAACTTTC TTGGATGATG TTCGCTCCGG CCAGATCAAC ACCGTCGAGG TGAAGAGTGA CCAGCGTACC ATCGAGGGTA CCAAAAGAAC CGGGGAAAAA TTTACCACTA TCATGCCTAT GTATGATCAG GATCTGATCA ACGATCTTGA CCGTAAGGGT GTGACCATGA AAGGTCAGGA AGCCGAAGAG TCAGGTTTCC TCACACAGAT CTTCATCTCT TGGTTCCCTA TGCTGTTGCT CATCGGGGTA TGGATCTTCT TCATGCGCCA GATGCAGGGC GGTGGCGGTA AAGGCGCCAT GTCTTTCGGT AAGAGTAAAG CCAAGCTGAT GAGCGAAGAT CAGATCAAGA CCACCTTCGG TGACGTCGCC GGTTGCGACG AGGCCAAGGA AGATGTCAAA GAGCTGGTCG ATTACCTCAA AGAGCCGACT AAGTTCCAGA AACTGGGTGG CCGTATACCT ACCGGTGTGC TCCTGGTTGG TCCTCCAGGT ACGGGTAAGA CTCTACTTGC CAAGGCGATT GCCGGTGAGG CCAAGGTGCC TTTCTTCACA ATTTCCGGTT CTGACTTCGT TGAGATGTTT GTCGGTGTCG GTGCCTCACG TGTTCGTGAC ATGTTTGAGC AGGCGAAGAA GTCTGCGCCT TGTATCATCT TCATCGATGA GATCGATGCC GTAGGTCGCC AGCGTGGCGC GGGTGTCGGT GGTGGTCACG ACGAGCGTGA GCAGACCCTT AACCAGATGC TGGTTGAGAT GGATGGTTTC GAGGGTAACG AAGGTATCAT CGTTATCGCC GCGACTAACC GTCCAGACGT ATTGGATGCT GCCTTACTGC GTCCGGGTCG TTTCGATCGT CAAGTGGTGG TTGGCCTGCC AGACGTACGT GGTCGTGAGC AGATCCTTAA GGTGCATATG CGTAAGGTGC CGCTGGCCGA TGACGTTAAG GCGAGCGTGA TTGCCCGTGG TACACCAGGC TTCTCTGGTG CCGATCTGGC TAACCTGGTA AACGAAGCGG CGCTGTTTGC TGCCCGTGGT AATCGCCGCG TGGTGGGCAT GGAAGAGTTC GAGAGCGCCA AAGACAAGAT CATGATGGGC GCCGAGCGCC GCACCATGGT AATGTCTGAA GAAGAGAAAG AGATGACCGC CTATCACGAA GCGGGTCACG CTATCGTTGG CTGTCTGGTA CCCGAGCACG ATCCTGTGCA CAAGGTGACT ATCATTCCTC GTGGCCGCGC CCTGGGTGTG ACCTTCTTCC TACCTGAGGC CGATGCCATC AGCCAGAGCC GTCGTAAGCT CGAGAGTCAG ATCTCTGTGG CCTATGGTGG ACGTATCGCC GAGGAGTTGA TCTATGGTAG CGAGCGTGTC TCTACCGGTG CTTCTCAAGA CATCAAGTAT GCGACTACGA TTGCGCGCAA CATGGTGACC CAATGGGGCT TCTCGGACAA GCTAGGTCCG GTATTGTACG CCGAAGATGA GGGCGAAGTG TTCCTCGGCC GTAGCATGGC TAAGGCGCAG CATATGTCGG ATGAGACGGC GTCGATTATC GATCTCGAAG TGAAACAGCT GATCGATAAT AACTATGGAC GCGCGCATCA GTTCCTGACA GATAACATGG ATATCCTTCA CGCGATGAAA GATGCGCTGA TGAAGTACGA GACCATAGAT GCGACTCAGA TTGACGACCT GATGGCCCGT CGTGAGGTGC GTGCACCGGC CGATTGGAAC ATGGATGAGA ATGGTTCAAA CGGCAAGGGT AATGGCGGTC GTGGTGAGGC GGTTACATCG CCAGAGCCAA GCGAAGCGCC TGCCGCCGAG CCTGCGAGTG AGCCAAAAGA AGGTGATGAA TCACCTGTAG TTAAGTAA
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Protein sequence | MSDMAKNLIL WVVIAVVLMS VFQGYSPSSS NSMKMDYSTF LDDVRSGQIN TVEVKSDQRT IEGTKRTGEK FTTIMPMYDQ DLINDLDRKG VTMKGQEAEE SGFLTQIFIS WFPMLLLIGV WIFFMRQMQG GGGKGAMSFG KSKAKLMSED QIKTTFGDVA GCDEAKEDVK ELVDYLKEPT KFQKLGGRIP TGVLLVGPPG TGKTLLAKAI AGEAKVPFFT ISGSDFVEMF VGVGASRVRD MFEQAKKSAP CIIFIDEIDA VGRQRGAGVG GGHDEREQTL NQMLVEMDGF EGNEGIIVIA ATNRPDVLDA ALLRPGRFDR QVVVGLPDVR GREQILKVHM RKVPLADDVK ASVIARGTPG FSGADLANLV NEAALFAARG NRRVVGMEEF ESAKDKIMMG AERRTMVMSE EEKEMTAYHE AGHAIVGCLV PEHDPVHKVT IIPRGRALGV TFFLPEADAI SQSRRKLESQ ISVAYGGRIA EELIYGSERV STGASQDIKY ATTIARNMVT QWGFSDKLGP VLYAEDEGEV FLGRSMAKAQ HMSDETASII DLEVKQLIDN NYGRAHQFLT DNMDILHAMK DALMKYETID ATQIDDLMAR REVRAPADWN MDENGSNGKG NGGRGEAVTS PEPSEAPAAE PASEPKEGDE SPVVK
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