Gene Shew_2829 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2829 
Symbol 
ID4922336 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp3354335 
End bp3354820 
Gene Length486 bp 
Protein Length161 aa 
Translation table11 
GC content47% 
IMG OID640164424 
Producthypothetical protein 
Protein accessionYP_001094954 
Protein GI127513757 
COG category[S] Function unknown 
COG ID[COG0779] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000100799 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00340048 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCCCTTTT TTGTTTTTCG GGGGGTAACC TTGGCAACTT TAGAAAGTAA GCTGGAACAG 
ATGCTTATCG CACCAGTTGA AGCATTGGGC CATAGTCTGT GGGGATTGGA ATATGTACAG
GCAGGCAAGC ATTCAGTGCT GCGTGTATAT ATAGATAATG AAAACGGCAT CTTTATCGAT
GATTGTGCCG ATGTCAGTCG CCAGATCAGT GCCGTGCTCG ATGTCGAGGA CCCGATTTCG
ACCGAATATA CACTAGAAGT TTCCTCACCG GGTGTCGATA GACCATTATT TACTGCAGAG
CAGTATGCGC GATACCTAGG TGAAACCGTA AAGGTACAAC TGACTATGCC TGTCGCTGGT
AGTCGTAATT TAAAAGGGAC CGTCGCGGGC GTTGAGGGGC AGATGCTGAC CCTTACCGTA
GATGGCAACG AACTGATTAT TGCCTTGGAT AACATCCGCA AGGGCAACTT AATCGCTAAG
TTTTGA
 
Protein sequence
MPFFVFRGVT LATLESKLEQ MLIAPVEALG HSLWGLEYVQ AGKHSVLRVY IDNENGIFID 
DCADVSRQIS AVLDVEDPIS TEYTLEVSSP GVDRPLFTAE QYARYLGETV KVQLTMPVAG
SRNLKGTVAG VEGQMLTLTV DGNELIIALD NIRKGNLIAK F