| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2825 |
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| Symbol | truB |
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| ID | 4922495 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3348630 |
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| End bp | 3349577 |
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| Gene Length | 948 bp |
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| Protein Length | 315 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640164420 |
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| Product | tRNA pseudouridine synthase B |
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| Protein accession | YP_001094950 |
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| Protein GI | 127513753 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0130] Pseudouridine synthase |
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| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.791691 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00423146 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCGCGTA AACCTAGAGG TCGCTTGGTC GACGGCATAG TGCTGCTGGA CAAAGACACG
GGAATGAGCT CCAACTTCGC CTTACAGAGA GTAAAGCGAA TCTACAACGC CGCCAAGGCG
GGTCATACCG GCGCGTTGGA TCCTCTAGCG ACCGGCATGC TACCGATCTG CCTGGGGGAG
GCCACCAAAT TTTCGCAGCA TCTGCTCGAT GCCGATAAAC GTTATCTGGT GACCGCCAAG
CTAGGTGTGC GCACAGACAC CAGCGACTCA GACGGTGAGG TGGTGCAGAC GCGCCCGATT
AACTTCACCG AGCAGCAGCT CGAAGAGGCG CTGGAGCATT TTCGTGGTGA GACCATGCAG
GTGCCCTCTA TGTACTCGGC GCTCAAGTAT CAGGGCCAGC CCCTGTACAA GTACGCCAGA
GAAGGCAAAG AGGTGCCGCG CGAGGCGCGT CCTATCAAGG TCTTCGAGCT TAACTTTATT
AAGCTTGAGG GTGACGAGCT GACCCTGGAC ATCCACTGCT CCAAGGGGAC CTATATCCGC
ACCATTACCG ATGATCTCGG TGAGATGCTG GGCTGTGGTG CTCATGTCAT CATGCTGCGC
CGCACAGGCG TTGCCGGTTA TCCTTACGAT AAGATGGTGA CGCTGGAGCA GCTCGAGGCA
TTGCTTGCCA AGGCGCAGGA AGAGGAGCGT CCACCTAAGG AACTGCTGGA TCCTTTGTTG
CTGCCCATGG ATACTGCGGT GAGCGGCCTC AAAGAGATTA ATGTCTCTGA CGAGCTGGCC
CACTATCTGA TGAACGGTAA CCCGGTTCAG GTGGCTAATT TGCCCATCGA TGAGTTGGTG
CGTATCACCC TAGGTGAAGC GAAACAGTTT GTCGGTATCG GCCAGATGAA CGACGATGGC
TTGCTGGCGC CTAAGCGCCT GGTGGTATTG CACGACGAGC AGGCTTGA
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| Protein sequence | MARKPRGRLV DGIVLLDKDT GMSSNFALQR VKRIYNAAKA GHTGALDPLA TGMLPICLGE
ATKFSQHLLD ADKRYLVTAK LGVRTDTSDS DGEVVQTRPI NFTEQQLEEA LEHFRGETMQ
VPSMYSALKY QGQPLYKYAR EGKEVPREAR PIKVFELNFI KLEGDELTLD IHCSKGTYIR
TITDDLGEML GCGAHVIMLR RTGVAGYPYD KMVTLEQLEA LLAKAQEEER PPKELLDPLL
LPMDTAVSGL KEINVSDELA HYLMNGNPVQ VANLPIDELV RITLGEAKQF VGIGQMNDDG
LLAPKRLVVL HDEQA
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