Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2823 |
Symbol | |
ID | 4922493 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 3346124 |
End bp | 3348157 |
Gene Length | 2034 bp |
Protein Length | 677 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640164418 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_001094948 |
Protein GI | 127513751 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.992425 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.00613346 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGCGCTC GGTTTAAATC CTTAACATGG AAACAGACGA CACTGGTCGT GTTTTCAGCG TTATTTTTTG CCGTTGCCAT CTTTATCGTC GAAGTCGCCC TAGTCGGCGT GTCGGCCCGT CAACAACTCA TGGTAGCCCA GGAAGAGCTG CTGGACTCCA TCGAACAACC AGCCGCCAAC GCCGTCTGGG CACTGGATGA CAATCTGGCG ACTCAGACCC TCGAAGGGGT ACTTAAGGTC GAGCATGTGG GCGAGGCGGT GATCGAGCTC GACGATGGCA GCATGTTTGT CTCCATGAAC AACCCCTTCA CCGACAACCC GCTGGTGCGC AAGCTCAGTG AAAAGCTGTT TGGCGACCTG AAACAGATAA GCCGCACCCT CTACCGCCCC TCTTTCTTCG AAGGCACGGA GAAGCAGCAG ATCATCGGCA CCCTGACCAT CTTCTATAAC ACCCAGGAGC TGACCGACTC CCTCTTCTCT CAGTTACGCT TTAGCTTCCT GGCCACCCTG GCCCGGGCGC TCTTGGTCAC CATGGCACTG TCCATCATCT TCCACCGCTT CCTCACCAAG CCGATCGCGC AGATCAGTGA GGCGATTGAT AAGATTGACC CTGAGCTGCC GGACGAAAAC CTGCTGCCCA CATCAACCGC CCACCAGGAT GACGAACTGG GCCTGGTGAC ATCAAAATTT AATCAAATCT TAATTCAGTT TGGCCAGACC CAGAGCAAGC TTCGCCGTAT GGCGACCCGG GATCCCCTCA CCGGACTGCC TAACCGCACC CTGCTGCTGG AGACCATAGC GGTATCGATT CAACGCGCCA GGGTGCACAA GCATCAATTT ACCATGCTGT TTATCGACCT CGACCGTTTC AAGAACGTCA ACGACTCTCT GGGCCATGCC CTGGGAGATC AGTTCCTGGC CCGTATCGCC AGAGTGCTGG AGCGGGTAGT CGGCGATCGC GGCACGGTGG CGCGTCTCGG CGGTGATGAG TTTGTCATCC TGGCCGAAGA TGCCAGAACG CCGGATCAGG CCGCCGATTT TGTCGACAAG CTACTTATGC AGCTCAACGT GCCACTGCAG CTGAACGAGC ACACCATACA TCCCGCCGCG TCGGTGGGGA TCTCCATCTA CCCCGACGAT GGCCTGAGCG CCGAAGATCT GATCCGCCAC GCCGATATCG CCATGTACAG CGCCAAGGCG GCGGGCTCTA ATCAATGGGC CTTCTTCAAG CAGCAGATGA CAGAACGGGC CGCGGTGCGC CTGAGAACCG AAGCCTCCCT GCATGACGCC CTGAAGAACA ACGAGTTCCT ACTGCATTTT CAGCCCAAGT TTAATATCAA GACCGGCAAG GTGATCGCCT GTGAGGCGCT GATTCGCTGG AAGAAAGATG GCCGCCTCAT CAGCCCCATG TCTTTCATCC CTGTGGCCGA AGAGACGGGT ATCATCATCC CACTGGGACG CTGGGTCATC GAAGAGGCCT GCCGCACCCT GAAACATTGG CGTAAGCGCT ACAACTACGC CATTCCCATC GCGGTTAACG TCGCGTCGCA GCAGTTTGCC GACGCCAGCC TGGTGCCGGA CATCAAACAG CTGGCACTGA GGTACCAGAT AGACCCCAGT CTTCTAGAGG TGGAGATCAC CGAGACCTCA CTGATGAATG ATATCGAGCT CGCCATCCAT AAACTGGAGC AGCTCAAGGG CGCAGGATTT GGTATCGCGG TCGATGACTT CGGTACCGGC TACTCCTCAC TTTCCTACCT GCGTCATCTG CCGATCACCA CCATGAAGAT CGATCGCTGC TTCGTGACAG ATCTGCCAAA CGAGAGCGCC ATCGCCTCCA CCATCTTGAT GCTCGGCAAG CAGCTCAACC TGCATATCGT GGCCGAAGGG ATTGAGAATG AGCAGCAGCT CAACTGGCTA AAACAGATGG ATTGTGAGAT AGGACAGGGC TTCTACTACA GCCAGCCGCT GGATATCAGC GAATTCGAGA ACCGCTATAT CGCCCCCAAC AACGCTAGTA TCAGTCAGAT TTAA
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Protein sequence | MSARFKSLTW KQTTLVVFSA LFFAVAIFIV EVALVGVSAR QQLMVAQEEL LDSIEQPAAN AVWALDDNLA TQTLEGVLKV EHVGEAVIEL DDGSMFVSMN NPFTDNPLVR KLSEKLFGDL KQISRTLYRP SFFEGTEKQQ IIGTLTIFYN TQELTDSLFS QLRFSFLATL ARALLVTMAL SIIFHRFLTK PIAQISEAID KIDPELPDEN LLPTSTAHQD DELGLVTSKF NQILIQFGQT QSKLRRMATR DPLTGLPNRT LLLETIAVSI QRARVHKHQF TMLFIDLDRF KNVNDSLGHA LGDQFLARIA RVLERVVGDR GTVARLGGDE FVILAEDART PDQAADFVDK LLMQLNVPLQ LNEHTIHPAA SVGISIYPDD GLSAEDLIRH ADIAMYSAKA AGSNQWAFFK QQMTERAAVR LRTEASLHDA LKNNEFLLHF QPKFNIKTGK VIACEALIRW KKDGRLISPM SFIPVAEETG IIIPLGRWVI EEACRTLKHW RKRYNYAIPI AVNVASQQFA DASLVPDIKQ LALRYQIDPS LLEVEITETS LMNDIELAIH KLEQLKGAGF GIAVDDFGTG YSSLSYLRHL PITTMKIDRC FVTDLPNESA IASTILMLGK QLNLHIVAEG IENEQQLNWL KQMDCEIGQG FYYSQPLDIS EFENRYIAPN NASISQI
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