Gene Shew_2823 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2823 
Symbol 
ID4922493 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp3346124 
End bp3348157 
Gene Length2034 bp 
Protein Length677 aa 
Translation table11 
GC content56% 
IMG OID640164418 
Productdiguanylate cyclase/phosphodiesterase 
Protein accessionYP_001094948 
Protein GI127513751 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.992425 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00613346 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGCGCTC GGTTTAAATC CTTAACATGG AAACAGACGA CACTGGTCGT GTTTTCAGCG 
TTATTTTTTG CCGTTGCCAT CTTTATCGTC GAAGTCGCCC TAGTCGGCGT GTCGGCCCGT
CAACAACTCA TGGTAGCCCA GGAAGAGCTG CTGGACTCCA TCGAACAACC AGCCGCCAAC
GCCGTCTGGG CACTGGATGA CAATCTGGCG ACTCAGACCC TCGAAGGGGT ACTTAAGGTC
GAGCATGTGG GCGAGGCGGT GATCGAGCTC GACGATGGCA GCATGTTTGT CTCCATGAAC
AACCCCTTCA CCGACAACCC GCTGGTGCGC AAGCTCAGTG AAAAGCTGTT TGGCGACCTG
AAACAGATAA GCCGCACCCT CTACCGCCCC TCTTTCTTCG AAGGCACGGA GAAGCAGCAG
ATCATCGGCA CCCTGACCAT CTTCTATAAC ACCCAGGAGC TGACCGACTC CCTCTTCTCT
CAGTTACGCT TTAGCTTCCT GGCCACCCTG GCCCGGGCGC TCTTGGTCAC CATGGCACTG
TCCATCATCT TCCACCGCTT CCTCACCAAG CCGATCGCGC AGATCAGTGA GGCGATTGAT
AAGATTGACC CTGAGCTGCC GGACGAAAAC CTGCTGCCCA CATCAACCGC CCACCAGGAT
GACGAACTGG GCCTGGTGAC ATCAAAATTT AATCAAATCT TAATTCAGTT TGGCCAGACC
CAGAGCAAGC TTCGCCGTAT GGCGACCCGG GATCCCCTCA CCGGACTGCC TAACCGCACC
CTGCTGCTGG AGACCATAGC GGTATCGATT CAACGCGCCA GGGTGCACAA GCATCAATTT
ACCATGCTGT TTATCGACCT CGACCGTTTC AAGAACGTCA ACGACTCTCT GGGCCATGCC
CTGGGAGATC AGTTCCTGGC CCGTATCGCC AGAGTGCTGG AGCGGGTAGT CGGCGATCGC
GGCACGGTGG CGCGTCTCGG CGGTGATGAG TTTGTCATCC TGGCCGAAGA TGCCAGAACG
CCGGATCAGG CCGCCGATTT TGTCGACAAG CTACTTATGC AGCTCAACGT GCCACTGCAG
CTGAACGAGC ACACCATACA TCCCGCCGCG TCGGTGGGGA TCTCCATCTA CCCCGACGAT
GGCCTGAGCG CCGAAGATCT GATCCGCCAC GCCGATATCG CCATGTACAG CGCCAAGGCG
GCGGGCTCTA ATCAATGGGC CTTCTTCAAG CAGCAGATGA CAGAACGGGC CGCGGTGCGC
CTGAGAACCG AAGCCTCCCT GCATGACGCC CTGAAGAACA ACGAGTTCCT ACTGCATTTT
CAGCCCAAGT TTAATATCAA GACCGGCAAG GTGATCGCCT GTGAGGCGCT GATTCGCTGG
AAGAAAGATG GCCGCCTCAT CAGCCCCATG TCTTTCATCC CTGTGGCCGA AGAGACGGGT
ATCATCATCC CACTGGGACG CTGGGTCATC GAAGAGGCCT GCCGCACCCT GAAACATTGG
CGTAAGCGCT ACAACTACGC CATTCCCATC GCGGTTAACG TCGCGTCGCA GCAGTTTGCC
GACGCCAGCC TGGTGCCGGA CATCAAACAG CTGGCACTGA GGTACCAGAT AGACCCCAGT
CTTCTAGAGG TGGAGATCAC CGAGACCTCA CTGATGAATG ATATCGAGCT CGCCATCCAT
AAACTGGAGC AGCTCAAGGG CGCAGGATTT GGTATCGCGG TCGATGACTT CGGTACCGGC
TACTCCTCAC TTTCCTACCT GCGTCATCTG CCGATCACCA CCATGAAGAT CGATCGCTGC
TTCGTGACAG ATCTGCCAAA CGAGAGCGCC ATCGCCTCCA CCATCTTGAT GCTCGGCAAG
CAGCTCAACC TGCATATCGT GGCCGAAGGG ATTGAGAATG AGCAGCAGCT CAACTGGCTA
AAACAGATGG ATTGTGAGAT AGGACAGGGC TTCTACTACA GCCAGCCGCT GGATATCAGC
GAATTCGAGA ACCGCTATAT CGCCCCCAAC AACGCTAGTA TCAGTCAGAT TTAA
 
Protein sequence
MSARFKSLTW KQTTLVVFSA LFFAVAIFIV EVALVGVSAR QQLMVAQEEL LDSIEQPAAN 
AVWALDDNLA TQTLEGVLKV EHVGEAVIEL DDGSMFVSMN NPFTDNPLVR KLSEKLFGDL
KQISRTLYRP SFFEGTEKQQ IIGTLTIFYN TQELTDSLFS QLRFSFLATL ARALLVTMAL
SIIFHRFLTK PIAQISEAID KIDPELPDEN LLPTSTAHQD DELGLVTSKF NQILIQFGQT
QSKLRRMATR DPLTGLPNRT LLLETIAVSI QRARVHKHQF TMLFIDLDRF KNVNDSLGHA
LGDQFLARIA RVLERVVGDR GTVARLGGDE FVILAEDART PDQAADFVDK LLMQLNVPLQ
LNEHTIHPAA SVGISIYPDD GLSAEDLIRH ADIAMYSAKA AGSNQWAFFK QQMTERAAVR
LRTEASLHDA LKNNEFLLHF QPKFNIKTGK VIACEALIRW KKDGRLISPM SFIPVAEETG
IIIPLGRWVI EEACRTLKHW RKRYNYAIPI AVNVASQQFA DASLVPDIKQ LALRYQIDPS
LLEVEITETS LMNDIELAIH KLEQLKGAGF GIAVDDFGTG YSSLSYLRHL PITTMKIDRC
FVTDLPNESA IASTILMLGK QLNLHIVAEG IENEQQLNWL KQMDCEIGQG FYYSQPLDIS
EFENRYIAPN NASISQI