Gene Shew_2817 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2817 
Symbol 
ID4922487 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp3338227 
End bp3339486 
Gene Length1260 bp 
Protein Length419 aa 
Translation table11 
GC content48% 
IMG OID640164412 
Productnucleoside transporter 
Protein accessionYP_001094942 
Protein GI127513745 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG1972] Nucleoside permease 
TIGRFAM ID[TIGR00804] nucleoside transporter 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value6.83947e-06 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value4.93259e-05 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGATATTT TAATGAGTTT AGTAGGGGTG GTCGTCCTAC TCGCGATAGG TTTTTTGCTT 
TCTAACAACA AAAAAGCTAT CAACATGCGT ACCGTATTTG GTGCACTTGC GATTCAGGCA
TTCTTTGCAG GTTTCGTACT GTACGTACCT ATCGGTAAAG ACATTCTAAA AAGTGTTTCA
GATGGCGTAT CTAGCGTTAT CGGTTACGCA CAAAACGGTA TCGGCTTCCT GTTCGGCGAT
CTGGCTAACT TCAAAGTGGG CTTCATCTTC GCTATCAACG TACTGCCTGT TATCGTCTTC
TTCTCATCGC TGATCGCGGT ACTTTACTAC CTGGGCATCA TGCAGTGGAT CATCCGTATC
ATCGGTGGTG GTCTGCAGAA AGCTCTGGGT ACTAGCCGTA CTGAGTCTAT GTCAGCGACT
GCTAACATCT TCGTTGGTCA AACTGAAGCG CCACTGGTTG TTCGTCCATT CATCGCGACT
ATGACTCAAT CTGAGCTGTT CGCTATCATG GTGGGTGGTC TAGCCTCTAT CGCTGGTTCA
GTATTGGCTG GTTACGCGCA GATGGGTGTG CCTATCGAGT ACCTAGTTGC TGCATCATTC
ATGGCTGCAC CTGGTGGTCT ATTGATGGCT AAGCTAATGC ATCCTGAAAC AGAGAAAACT
GTTAACGAAA TGGATGAGCT GCCAGAAGAT CCAGACAAGC CAGCTAACGT ACTTGACGCT
GCTGCTGCCG GTGCTTCATC TGGTATGCAC CTAGCTCTGA ACGTTGGTGC TATGCTGCTA
GCCTTCGTTG GTCTGATTGC GATGATCAAC GGTATTATCG GTGGCGTAAC TGGTCTGTTC
GGTGCGGAAG GTATCACCCT AGAGCTGATC CTTGGTTACA TCTTCATGCC ACTTGCATTC
CTAATCGGTG TGCCTTGGAA CGAAGCGCTT ATCGCAGGTT CTTTCATCGG TCAGAAGATC
GTTGTTAACG AATTCGTTGC TTACCTGAAC TTTGCTCCAT ACCTGAAAGA CGTTGCTGAC
GGTGGTCTGC TAGTTGAAGC GACTAACGCT GTAATGACTG ACAGAACTAA GGCAATCATT
TCATTCGCTC TGTGTGGTTT CGCGAACCTG TCTTCTATCG CGATTCTACT GGGTGGTCTA
GGTGCAATGG CTCCTACCCG TCGTCACGAC CTAGCTAAGC TTGGTATCCG TGCGGTGATA
GCTGGCTCTC TGGCTAACCT AATGAGTGCA ACGCTAGCGG GTCTGTTCCT AGCGTTATAA
 
Protein sequence
MDILMSLVGV VVLLAIGFLL SNNKKAINMR TVFGALAIQA FFAGFVLYVP IGKDILKSVS 
DGVSSVIGYA QNGIGFLFGD LANFKVGFIF AINVLPVIVF FSSLIAVLYY LGIMQWIIRI
IGGGLQKALG TSRTESMSAT ANIFVGQTEA PLVVRPFIAT MTQSELFAIM VGGLASIAGS
VLAGYAQMGV PIEYLVAASF MAAPGGLLMA KLMHPETEKT VNEMDELPED PDKPANVLDA
AAAGASSGMH LALNVGAMLL AFVGLIAMIN GIIGGVTGLF GAEGITLELI LGYIFMPLAF
LIGVPWNEAL IAGSFIGQKI VVNEFVAYLN FAPYLKDVAD GGLLVEATNA VMTDRTKAII
SFALCGFANL SSIAILLGGL GAMAPTRRHD LAKLGIRAVI AGSLANLMSA TLAGLFLAL