Gene Shew_2790 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2790 
Symbol 
ID4922724 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp3299791 
End bp3301146 
Gene Length1356 bp 
Protein Length451 aa 
Translation table11 
GC content56% 
IMG OID640164385 
Productnucleoside recognition domain-containing protein 
Protein accessionYP_001094915 
Protein GI127513718 
COG category[S] Function unknown 
COG ID[COG3314] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.727752 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.835537 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGCTGAAA AACAAACCCA TAACATTAAA ACCGTGCTGA CGTTTCTAGT CCCTTCCATT 
ATCGGACTGT TACTCTTCAT GACCCCCATT AGCTATCAAG ATGCCATCAC GATCCCCATC
GCCATCGTAT CTAAGGGGCT GCAAAATCTA TTGGGCGATA GCATTGTCGC CATCGTCACC
GCCATTGTGG TGCTCACCGC TATCGCGACT CTCATCTGCA AAGCGGCAAA ACCCACAATA
CTCAATCGCT ATCCCTTCTT TCGTGCCCTG CTCGACGTCA GCCCCATGTG GGCCCTGGTG
CGTGTGCTGG GTGCCATCTT CATCGTGCTG ACCTTTACCG GCACTGGGCC CGAGGCGATT
CACTCGGGCA ATACGGGCGC ACTGGTGCTC AACGACCTGC TCCCCGTGCT ATTTTGCGTG
TTTATCTTTG CCGGCATGTT GCTGCCACTG CTGCTTAACT TCGGCCTGCT GGAGCTGTTC
GGCACCCTGC TGACCAAGGT GATGCGCCCT GTGTTCAACC TGCCGGGACG CAGCGCCATC
GACTGTATGG CCTCCTGGCT GGGCGATGGC AGCGTCGGTA TTCTGAAGAC CAGTAAGCAA
TATGAATCCC GTTTCTACAC CCAGAGAGAA GCGGCGGTGA TCGGCACCAC CTTCTCGGCA
GTCTCTATCA CCTTCTCGCT GGTGGTGATC TCTCAGGTTA AGCTCGAGCA CCTGTTCGTG
CCCTTCTATC TGACCGTCTG TTTGGCCGGT GTGGTCGCGG CCATCGTTGT GCCTAAGCTG
CCCCCGCTCT CTTGGAAGAA AGATCACTAC ATAGATGAGA CCCCACGTCA TCCCGACGAT
GAGGTGATCC CTCATGGTAA GGGCGTCTTC GCCTGGGGCT TGGAGCAGGC ACTGACCAAG
GCGGCCAAGG CCGAAAGCGT GGGTCATACC CTGAAAGATG GTCTGAAGAA CGTGATCGAC
ATGATCTTCG GCGTGATCCC TGTGGTGATG GCCATAGGTA CGGTCGCCCT GATGATCGCC
GAATACACGC CTATTTTTAA CTATCTGGGC ATGCCATTCA TTCCACTGCT TGAGCTGCTA
CAGGTGCCGG AAGCCGCCGA AGCTTCTAAG ACCATAGTAG TGGGCTTTGC CGACATGTTC
ATCCCGTCGA TCCTGGCCAG CTCCATCGAG TCGGACATGA CCCGCTTCAT CATCGCCGCC
ATGTCGGTGA CCCAGCTGAT CTACATGAGT GAAGTAGGCG CCCTGCTGAT TGGCAGCAAG
ATCCCGGTCA ATATCCTAGA GCTGTTTGTC ATCTTTATCC TAAGAACCCT GGTCACCCTG
CCGGTGATCG CAGGTGTCGC CCACCTTATC TTCTAA
 
Protein sequence
MAEKQTHNIK TVLTFLVPSI IGLLLFMTPI SYQDAITIPI AIVSKGLQNL LGDSIVAIVT 
AIVVLTAIAT LICKAAKPTI LNRYPFFRAL LDVSPMWALV RVLGAIFIVL TFTGTGPEAI
HSGNTGALVL NDLLPVLFCV FIFAGMLLPL LLNFGLLELF GTLLTKVMRP VFNLPGRSAI
DCMASWLGDG SVGILKTSKQ YESRFYTQRE AAVIGTTFSA VSITFSLVVI SQVKLEHLFV
PFYLTVCLAG VVAAIVVPKL PPLSWKKDHY IDETPRHPDD EVIPHGKGVF AWGLEQALTK
AAKAESVGHT LKDGLKNVID MIFGVIPVVM AIGTVALMIA EYTPIFNYLG MPFIPLLELL
QVPEAAEASK TIVVGFADMF IPSILASSIE SDMTRFIIAA MSVTQLIYMS EVGALLIGSK
IPVNILELFV IFILRTLVTL PVIAGVAHLI F