Gene Shew_2775 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2775 
Symbol 
ID4922739 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp3280656 
End bp3282026 
Gene Length1371 bp 
Protein Length456 aa 
Translation table11 
GC content57% 
IMG OID640164370 
ProductMATE efflux family protein 
Protein accessionYP_001094900 
Protein GI127513703 
COG category[V] Defense mechanisms 
COG ID[COG0534] Na+-driven multidrug efflux pump 
TIGRFAM ID[TIGR00797] putative efflux protein, MATE family 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGAGC ATCATGCCGT GCACCAGAGT GATGAGCACT CAGATTTAGC CACAGCCCCC 
ATCCCTAAGC TGGTGTGGCG CTATGCCATT CCTACCATTC TCTCCATGGT GGTGACCGGC
GTCTATGTGG CCATCGACGG TATGTTTGTC GGCCATTATC TTGGCGAGGT GGGCTTGGCG
GGCATGATGC TGGCCTATCC CGTCGGTGCG ATACTCTACG CGGTAGGTGC ATTAATTGGC
ATGGGCGCCG CATCATTGGT GTCGATAAAC CTGGGGCTAA AAGATGTCGC TAGGGCGCGG
CACTTGCTGG GTAACGCCTT CACCCTCTGT CTGCTGGCGG GCACCGGACT GGCCCTGCTG
GGTACCCGTT GGAGCCAGAC CATACTCATC TGGCTCGGGG CCGAAGGGGA GGTGCTGACC
AGCGCCGAGC AGTATCTGTT TTGGTATTTT GCCCTCGGGG TCTTTCCCGT ATTGGCCATC
GCCTTTACCG CCTTGCTGCG TAACGATGGC CGTCCCGGCT TCGTCACCCT GGTGCTTATC
CTCTCAGGCT GTTTGAACGT GTTATTGGAT TGGCTGCTGA TCGTCGTGTT TCCCTATGGC
CTGGCGGGCG CCGCCATCGC CACCATGATC TGTCAGGCCT TCACTGCGCT CGCCTGCCTG
CAGCATTTCT TCACCAAGCG CACGCGATTG GGGATAAACT GGCAGCAGAT GCGTCTGAAT
CTGGACCATT GCAGCAACAT CCTCAGGGTC GGCGTGCCAA GCTTCTTGAT GAACCTCTAC
CTCTCCATCG TCCTGACCCT GCATAACATG GCGTTTCTCT GGGTTGGCGG CCCCATTCAT
GTGGCGGCCT ATGGGGTGGT GAGCTACGCC GAGGCGCTGT TTTACCTGAT CTTCGAGGGG
ATAGCTTTTG GTACTCAGCC TCTGTTTAGC TTCAACACCG GGGCGAAGCG TTTCGACAGG
GTGTTCGAGA CCCTGAGGCT GGTCATTATC ATGACTCTGG TGACCGCGCT GGCGGGCGTC
GTCTTTATCT ACTGGGCGCC AGAATATCTG GTTTATATCT TTGCCGGGGA TAATTCTGAG
CTGGCGCCCG TGGCAATAGA GGGGATGCGC CTCTACTTCT GGGGACTGCC GTTCGAGGGG
CTTATTCTGG TGGGCGCAGC CTTCTTCCAG GCGATCAACC GTCCTAAGGA GGCCTCGATA
TTGACAGGTA GCAAGCTGGT GTTGATCGCC ATGGTGCTCT ATCTGTTCGC CTGGCTGTTT
GGGGTCACAG GTGTCTGGAT CTCCCTGGCG AGCTGCTCCT TATTGCTGAC CATCTGGATG
GTTTACACTT TAACTAAGCT TTCCAAGAAG TTAACTAACC CAATGTTTTA A
 
Protein sequence
MTEHHAVHQS DEHSDLATAP IPKLVWRYAI PTILSMVVTG VYVAIDGMFV GHYLGEVGLA 
GMMLAYPVGA ILYAVGALIG MGAASLVSIN LGLKDVARAR HLLGNAFTLC LLAGTGLALL
GTRWSQTILI WLGAEGEVLT SAEQYLFWYF ALGVFPVLAI AFTALLRNDG RPGFVTLVLI
LSGCLNVLLD WLLIVVFPYG LAGAAIATMI CQAFTALACL QHFFTKRTRL GINWQQMRLN
LDHCSNILRV GVPSFLMNLY LSIVLTLHNM AFLWVGGPIH VAAYGVVSYA EALFYLIFEG
IAFGTQPLFS FNTGAKRFDR VFETLRLVII MTLVTALAGV VFIYWAPEYL VYIFAGDNSE
LAPVAIEGMR LYFWGLPFEG LILVGAAFFQ AINRPKEASI LTGSKLVLIA MVLYLFAWLF
GVTGVWISLA SCSLLLTIWM VYTLTKLSKK LTNPMF