| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2703 |
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| Symbol | |
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| ID | 4922988 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3198442 |
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| End bp | 3200523 |
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| Gene Length | 2082 bp |
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| Protein Length | 693 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640164298 |
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| Product | Sel1 domain-containing protein |
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| Protein accession | YP_001094828 |
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| Protein GI | 127513631 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00296283 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTACCGCA CCATTTCGAC TCTCTTTTGC TTAGGAATCC TAAGTGCTTG CGCATCAACC
AACACTAATC CCTCCTCCTC CGAGAAGACG AATAATTCGT CTATCGATCT ACAGGTAGAA
AGTTCAACAC TGACAAGCGA GAATAAGTTA ACACTTGCCA AGCAACTCTA TGAGAGTGCT
CAGCCCGAAA AAGCACTCAA ACTATACCAA GAGGCTGCCA ACGAGGGGCT ACCGAGAGCT
CAGAGTGAGT TAGGATTAAT CTACGACGTT GGCGCGTTAG GTACTAAAGA AGACAACGAA
CTTGCATTTA AGTGGTATCT AAAAGCCGCA AAACAGAAGG ACACTCAAGC CTTAATCAAC
CTCGCAGCTT TTTATCGAAA TGGTGAGTTT GTCGAACAAG ACCTAGATCA AGCGATAGAT
TACTATCGGC AAGCTATATC CTTGAATGAT CCAATAGCAT TTTGCGAATT AGGATTTCTC
TATTTAGACG AACCGCTCAA AAAAGACTTA CAACTGGCCG AGACAAACTT TCTACTCGGT
GCTAACCAAC AACAAACCTC CTGTTATCTA GGTTTGGCCT ATCTATTTCA CTTTGAAAAA
GACAAGGTTA AGCAATCATT AAAGTGGTAC CAACTCGCTG CCGACGCGGG TGATGCATCG
GCTCAATACA ACTTAGCCAC TCTATATTTC GACGGCATTG CCACCGAAGT AGATCCAAAG
CAGGGCATAC ATTATCTCCA ATTGGCTGTA GAGCAAAACC ATGGCTCAGC CACTGGCTAT
TTAGCCAATA TGTATGACTT CGGTTGGTTT GTAGAACAAG ACAAAAAGTT AGCCATACAA
CTTTATCAGA GAGCAGCAGA ACTAGGTGAT GCGGGGTCCA TGGTTAACTT AGCGACTTTT
TTTGAGTCAG GGCAATTCGT TCCTCAAGAT ATTGATATGG CTCTACAGTT ATACCAACTT
GCGGCTCAAC AAAATAATGC CCTAGCGCTT AATAACATGG CTTCTATCTA CTTCAACGGC
GAATACGTCG AACGAAATAC TGAATTAGGG CTAGAACTTT TCAATAAAGC GGCGACCATG
AATAATACCC AAGCTTTATA TAACTTGGGC ATCATCTATC GAGATGGGAA CACGGTTAAA
CGGGACAGAG CTAAAGCCTT GTCCTTTTTT CAACAAGCAG CAGATCTCGG CTTAGAGAGA
GCCTATTTCG AAGTAGGTAA AGCCTATCAT TTAGGCTTAG GAACAGAAAA AAATGATCAA
CTTGCACTTC CCTACTTATT AAAAAGTGCA AATAACAATT CATTGGCAAC CCACTACCTT
GGGGTCATCT ACTATAAGAG CGATTTAATC GAGCATGATA TCGATAAAGC AATTACTTAT
TTTGAGAAAG CCTATTCACA AGGAGAAATT GACCCGACCG CTAGCTTAGG TCAAATCTAC
GAATTTGGCA GCCCTAGTCA TCATGATGTC GACCTAGCCA TCGCTTGGTA TAAGAAAGGT
ATAAAGGGAG AACACCCTTA TGCTTATATG CGGTTAGCTT TACTCTATAT GAATGGAGAA
GGCGTGGCTA AAAACATGCA ACATGGCCTT GAACTCTACT CCACCTATTG CAAGTTGCGA
AAGTATAACG AAAACATGAA GCTTGGAAAC CTCTTCTTCT TTGGCAATCA GATTAAACAG
GACTACCAAC AAGCCCGTTA TTTTTACGAA TTGGCACTTA AGCAACAAGA TTCAACCGCC
GCCAATAACC TTGGCGAGAT GTATCGCCTA GGTCTTGGTG TTGAGCAAGA TATTGAGCAA
GCTATTAGCC TCTATCAATC CGCCGTAGAG TGGCATGGCC AAGCAACGGC CATGTTAAAT
CTCAGTGAAC TTTATCTCGA GGGTGAAGGC GTCCCAGTCG ATGAGAAGCT GGGATTATCT
TGGTTAAAAA AAGCGGCTGA AACTGACAAT AGTGAGGCCC AATATAGATT AGGGAAATAT
TTGCTCGACA GAAACGTTAC TTCTGCGGGA AAAATCTGGA TGAGTAGAAG TGCGGATGCT
GGAAATGAAA AAGCAATAGA GTATCTGCAA CAAAAGCTAT GA
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| Protein sequence | MYRTISTLFC LGILSACAST NTNPSSSEKT NNSSIDLQVE SSTLTSENKL TLAKQLYESA
QPEKALKLYQ EAANEGLPRA QSELGLIYDV GALGTKEDNE LAFKWYLKAA KQKDTQALIN
LAAFYRNGEF VEQDLDQAID YYRQAISLND PIAFCELGFL YLDEPLKKDL QLAETNFLLG
ANQQQTSCYL GLAYLFHFEK DKVKQSLKWY QLAADAGDAS AQYNLATLYF DGIATEVDPK
QGIHYLQLAV EQNHGSATGY LANMYDFGWF VEQDKKLAIQ LYQRAAELGD AGSMVNLATF
FESGQFVPQD IDMALQLYQL AAQQNNALAL NNMASIYFNG EYVERNTELG LELFNKAATM
NNTQALYNLG IIYRDGNTVK RDRAKALSFF QQAADLGLER AYFEVGKAYH LGLGTEKNDQ
LALPYLLKSA NNNSLATHYL GVIYYKSDLI EHDIDKAITY FEKAYSQGEI DPTASLGQIY
EFGSPSHHDV DLAIAWYKKG IKGEHPYAYM RLALLYMNGE GVAKNMQHGL ELYSTYCKLR
KYNENMKLGN LFFFGNQIKQ DYQQARYFYE LALKQQDSTA ANNLGEMYRL GLGVEQDIEQ
AISLYQSAVE WHGQATAMLN LSELYLEGEG VPVDEKLGLS WLKKAAETDN SEAQYRLGKY
LLDRNVTSAG KIWMSRSADA GNEKAIEYLQ QKL
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