| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2690 |
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| Symbol | |
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| ID | 4923199 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3184027 |
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| End bp | 3186465 |
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| Gene Length | 2439 bp |
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| Protein Length | 812 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640164285 |
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| Product | TonB-dependent receptor, plug |
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| Protein accession | YP_001094815 |
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| Protein GI | 127513618 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.228232 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACAGA TGCGCTTATC AGCAGTCGCG CTAGGATGTG CCGTATCCTT ATCGGTATCG
GCAGAGCAAC ACAATACCAG TATCGAGCAA CAAGCTTCGG CAGAGGTCGA ACGCATTACC
GTATATGGCC GGCAAAACAA GGTCGTGATG AATTCAGGTC TGGCGACTAA ATCTGATATG
TCACTCATGG AGACACCTGC GGCCGTAGTG GTGGTCGATG AGGAGTTGAT CACGACCCAG
GGGGCAACAG AGCTGCAGGA GCTGCTGCGT AACATCAGTG GTGTAACCCA GGCGGGCAAC
AACTATGGCA TAGGCGACAA TATCGTTATC CGTGGTCTGG GGGCCAATTA CACCTACGAT
GGCATGTATG GTGGCGCCGG TCTCGGGAAC ACCTTTAATC CGACACGTTC ATTGACCAAT
GTCGAGTCGG TTGAAGTGCT AAAAGGCCCT GCAACCGGCC TCTATGGTAT GGGCAGCGCC
GGCGGCGTGA TCAACCTTAT TGAGAAGAAG CCTCAGTTTA ATGCCAGTCA TCAATTCACT
GCCGAAGTTG GCCAGTGGGA CAGCTATTCA CTGGGGCTCG ACAGCACGGC TGCATTGACA
GATAAGGCGG CCTATCGTTT GGTGGCAAAG CATGCCAGAA GCGAGGGGTA TCGAGACATA
GGTACCGACA GGGATGAGGC TTACGCTTCA TTAAAATATC TACTGAGCGA TCAGCAAGAT
ATCATGCTCA GTGCCGCCTA CATCAAAGAT GCGATAGCGG TAGACTCAAT CGGACATCCT
ATTCGTATTT ACAATGCCGC GTCGGTTGGG GGTAAGCCTG CGGGTGAGGT TAGCTGGCAG
GATCTTATCA ACGATGCCTC TAACGCGGGA TTACAGCTGA GCGATGAACA GCGCCAGCAA
CTGGCTGACT CGTTATCTGC CGGTGATGGC CTGACTCCCT ATGCCTTCGG TGAGGCTGGG
ATCATTTCGC CGATGGCGAA GGACAATGAG GGTGAAGAGC TAAGGTTTAA GCTGACCCAT
AATATCTTTT TCGCTGACAA TCTTTTCCTT AATCAGCAGT TGCAGTATCG CGATTATCAG
TCGGGATTTG CCCGTCAGAC AGGTGCCTAT AACTATGTTT ATTGGAACCG CAACGGGGTG
ATCAACAGCG ATCCCCGAGC GCCTCTGGTG GTAGATGATC GTCTGTATCC CTTCGCCGCA
CGTCGCCAGG AGTATCGTCA GGTTCAGGCC GACGAGACTT CGTGGCAGTA TTTTGCCGAT
CTGCGTTATG ACTTTAGCGT CGCGGGAATA GATAACGAGC TGTTAGTTAA CGCCAATTTT
GAAGATCGCA ATATTCGCTT CAAGCAATAC TCTATCTATG ACGCGGACAA GGTGATCAAG
AATAAGGCCG GTGAGGTGAT CTATCAGGGC CAGCTGCCCT ATATTTTCGA CATTCGCTCG
CCTAATTGGG CGGAGGGACA GTTCGAAGAT TATGACCCTC TGATGACCAG CAACTATAAC
AAGAAGGTGC AGGCATGGGG CGTGGGCCTG CAACATGTGG GCTACTTTGA TTTTGGTATT
ACGACGCGAA TTGGCGTCGC CTTCAATGAC ATCTCTCAGC GTTACGAGCA TTATGGCGTC
GATGCGCGCT ACAGCGCCAG TCTCGCACAG CCTACGCCGG AAGCCGATAC CTCAGATGAT
GGGATGACCT ATAACTTGGG CATTACCTAC ATGCCAACCG ATGATCTGTC GTTCTTTATC
AATCACGCCA AGGGGCGCAC CGCCTATAGC GTGCTGGGCA GCCTAAAGGG CGATGGTGCC
GATAGAGAAG ACTCGGAGTC TATCAGCAAC GACATAGGGG TACGTTTTAA AGCCTTTGAT
GATCAGATGC TGGCCTCGAT TGTGGTGTTT GAAAGTTCAC GAACGAACTT GCAATACAAC
AACAAGGACT ATGAGGCGGG GGTATCGGGC CCAGATGTGG CGCAATATTT CTATGACGGC
AAGGAAGAGA CCAAAGGGGT TGAGCTGGAT CTCAATGCTC ACCTTGGTGA GCGCTGGGCG
ATAAATGTCA ATGGTGTCTA TCAAGACGCC AGAGACAAGC AAGATCCCAA CAGTACTAGC
TTCGATACGC GTCAGAAAGG TGTGCCTTAC GTGACGGCCA GTACCTGGGT GACCTATGAT
GCCGACTGGT TTAAGTTGCC GAGCCCGCTC AGTGTCAGTC TGGGCGCAAA ATATGTGGAT
GAGCGCAGCA CCCACTCCGC ATCGTTTGGG ATCCCAGATG GTTATGTGCC CAGTTATACC
GTGATGGATG CTGCGTTGAG TTATCAGGCA GACAGTTGGA CAGTGCAGCT GAATGTGAAT
AACCTGCTGG ATGAGCACTA TTATGAGAAA GCAATGTTCC TCGGCGGTAT GCCTGGCGCC
GAACGCAACG CTAAGCTGAG CCTCAGCTAT CGTTTATAA
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| Protein sequence | MKQMRLSAVA LGCAVSLSVS AEQHNTSIEQ QASAEVERIT VYGRQNKVVM NSGLATKSDM
SLMETPAAVV VVDEELITTQ GATELQELLR NISGVTQAGN NYGIGDNIVI RGLGANYTYD
GMYGGAGLGN TFNPTRSLTN VESVEVLKGP ATGLYGMGSA GGVINLIEKK PQFNASHQFT
AEVGQWDSYS LGLDSTAALT DKAAYRLVAK HARSEGYRDI GTDRDEAYAS LKYLLSDQQD
IMLSAAYIKD AIAVDSIGHP IRIYNAASVG GKPAGEVSWQ DLINDASNAG LQLSDEQRQQ
LADSLSAGDG LTPYAFGEAG IISPMAKDNE GEELRFKLTH NIFFADNLFL NQQLQYRDYQ
SGFARQTGAY NYVYWNRNGV INSDPRAPLV VDDRLYPFAA RRQEYRQVQA DETSWQYFAD
LRYDFSVAGI DNELLVNANF EDRNIRFKQY SIYDADKVIK NKAGEVIYQG QLPYIFDIRS
PNWAEGQFED YDPLMTSNYN KKVQAWGVGL QHVGYFDFGI TTRIGVAFND ISQRYEHYGV
DARYSASLAQ PTPEADTSDD GMTYNLGITY MPTDDLSFFI NHAKGRTAYS VLGSLKGDGA
DREDSESISN DIGVRFKAFD DQMLASIVVF ESSRTNLQYN NKDYEAGVSG PDVAQYFYDG
KEETKGVELD LNAHLGERWA INVNGVYQDA RDKQDPNSTS FDTRQKGVPY VTASTWVTYD
ADWFKLPSPL SVSLGAKYVD ERSTHSASFG IPDGYVPSYT VMDAALSYQA DSWTVQLNVN
NLLDEHYYEK AMFLGGMPGA ERNAKLSLSY RL
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