| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2673 |
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| Symbol | caiC |
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| ID | 4923126 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3163503 |
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| End bp | 3165059 |
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| Gene Length | 1557 bp |
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| Protein Length | 518 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640164268 |
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| Product | putative crotonobetaine/carnitine-CoA ligase |
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| Protein accession | YP_001094798 |
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| Protein GI | 127513601 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATATCG TGGGCAGCAG AACATTAAGG TGCATGTGGC AGGAGCGTGC TCAGCAGTAC
AGTGATAACA CGGCATTGAT CTATGAAGAT GCTGGCGGCG ATATCCGCAC CTTTACCTAT
CAATCCCTTG ACGCCCAGAT TAACCGGGCG GCCAACCTCT TCCTCAAACA GGGAATAGCC
AAGGGCGACA AGGTGGCGGT GCAGCTTTAT AACAGCCCGG AGTTTATCTT CTGCTGGTTT
GGTCTGGCCA AGATAGGCGC GGTGATCGTG CCTATCAACA CCCAATATGT GCAGGGGGAG
TGCAGCTACA TACTGACCAA GTGTGACGTC ACCGCCCTGG TGACAGAGCC AAGCTTTCTG
CCTATCTATG AGGCGTTGGC GGCGAAGGGT CAAAGGCTCG AGCAGGTCTT TGTCGCCCGC
GCTGCGGGAG AGCAGTTTGC GGGGCGGGTG AATTTTGATG ATCAGTTAGC ACTGCAGGCG
CCAACTCTCG ACCTGCATGT GCCGCTGGAA AGCGAAGACC CCGCGGAGAT CCTCTTCACC
TCGGGGACGA CCTCTCTACC CAAGGGAGTG GTGCTCACCC ACTGCAACCT GCAATTTGCC
GGGCACTATA CCGCCTGGCA GACCCGCTTG ACGGCCAAGG ACAGGTATCT CTCCATGATG
CCCAATTTTC ACATCGATTT TCAGTGCAAT GCGGCCATGG CGGTGTTTAC CGTCGGTGCT
TGCCTGGTGA TGTTGGAGAA ATACAGCGCC CGCCGTTTCT GGAAGCAGAT TTGCGACTAC
CGAGCCACGC TGACCCATAG CATGCCGATG ATCCTGCGCA CCCTGATGCT GCAACCCGTG
GCCGAGGGGG AAGACCAGCA CTGTCTGCGG GATATGCTGT TTTTCATGCA TATCTCAGAT
CAGGAGAAGC TGGATTTCGA GACGCGCTTC AAGGTGACCC TGTTTAACTC CTACGGCATG
ACAGAGACCC TGGTGGGCTT GATTGGCGAC ACGCCCGGCG AGCCTCGTCA TTGGCCGTCA
ATAGGACGCC CCGGGCTGGG ATATGAAGCC AAGGTGATCG ATGAGACCGG TCGGGAAGTG
CCGCCCAACG TGGTGGGCGA TCTCTGGGTC AAGGGCGTGC CTGGCCGCAG CCTGTTTAAA
GAGTATTACC AGGATCCACA GGCGACCGAG GCGGTGCTGC GCCGCGATGG CTGGCTCATC
ACAGGGGACA AGGCCTATGT GGATGAGCGG GGACTGTTCT ACTTCGTCGA TCGCAAGAGC
AACATGATCA AGCGCTCGGG CGAGAACATC TCCAGCACCG AGGTGGAGAA CGTGCTGATG
TCACACCCCG CCATTCAGGA TGCCGCCGTC ATAGGTGTGG CCGATCCCAT TCGCGATCAG
GCCGTCAAGG CATTCGTCAT ATTTGCCCCC GGCATGTCAC TGACCGTCGA GGAGATCTTG
GCGTTTTGTA GCGCCAACAT GGCCAAGTTT AAGGTGCCCA GTTACGTGGA GATCCGTGAG
GCTTTTCCTC GTACCTGCAC CTGCAAAGTC GATAAGAAAC TGCTCGAGAC CCGTTGA
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| Protein sequence | MDIVGSRTLR CMWQERAQQY SDNTALIYED AGGDIRTFTY QSLDAQINRA ANLFLKQGIA
KGDKVAVQLY NSPEFIFCWF GLAKIGAVIV PINTQYVQGE CSYILTKCDV TALVTEPSFL
PIYEALAAKG QRLEQVFVAR AAGEQFAGRV NFDDQLALQA PTLDLHVPLE SEDPAEILFT
SGTTSLPKGV VLTHCNLQFA GHYTAWQTRL TAKDRYLSMM PNFHIDFQCN AAMAVFTVGA
CLVMLEKYSA RRFWKQICDY RATLTHSMPM ILRTLMLQPV AEGEDQHCLR DMLFFMHISD
QEKLDFETRF KVTLFNSYGM TETLVGLIGD TPGEPRHWPS IGRPGLGYEA KVIDETGREV
PPNVVGDLWV KGVPGRSLFK EYYQDPQATE AVLRRDGWLI TGDKAYVDER GLFYFVDRKS
NMIKRSGENI SSTEVENVLM SHPAIQDAAV IGVADPIRDQ AVKAFVIFAP GMSLTVEEIL
AFCSANMAKF KVPSYVEIRE AFPRTCTCKV DKKLLETR
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