| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2642 |
|---|
| Symbol | |
|---|
| ID | 4924120 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 3117943 |
|---|
| End bp | 3118407 |
|---|
| Gene Length | 465 bp |
|---|
| Protein Length | 154 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640164237 |
|---|
| Product | flavodoxin |
|---|
| Protein accession | YP_001094767 |
|---|
| Protein GI | 127513570 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0369] Sulfite reductase, alpha subunit (flavoprotein) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.66337 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.959919 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAAAAG TGAATCTGGT ATATGGAACT GTCTATGGCA ATGCACAGTT TGTTGCCGAG
ACCCTGCAAG AAGAGCTATT GGCCAAAGAT ATCCAGGTCA CTCTGATGAC GCCAGAGACC
CTCAACGGCT TCGTACCGCC CGAGGATGAG TTGCTGCTGG TGGTTACCTC CACTACGGGT
CAGGGCGATC TGCCCGATGA TATTAGCCCC TGGTTTGAGA CCCTCAGAGG CGAGGCGCCT
TACCTGCCAA AGCTCGAATA TGGTGTCGTG GCGCTGGGGG ACTCGAGCTA TGAGACCTTC
TGTTTTGCCG GTATACGTTT CGATGAGTTG TTAACTGAGC TTGGCGGCAC GCGCATAGGT
GAACTGCTTA AGATAGATGC CTGTGAGACG ATGGAGCCGG AAGTAGAAGC AAAAGCATGG
TTAACCCAAT GGACCCAACT CATCAACGAC CACGCGGCCG ACTGA
|
|---|
| Protein sequence | MRKVNLVYGT VYGNAQFVAE TLQEELLAKD IQVTLMTPET LNGFVPPEDE LLLVVTSTTG
QGDLPDDISP WFETLRGEAP YLPKLEYGVV ALGDSSYETF CFAGIRFDEL LTELGGTRIG
ELLKIDACET MEPEVEAKAW LTQWTQLIND HAAD
|
|---|
| |