| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2613 |
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| Symbol | |
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| ID | 4920712 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3080597 |
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| End bp | 3084097 |
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| Gene Length | 3501 bp |
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| Protein Length | 1166 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640164207 |
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| Product | integral membrane sensor hybrid histidine kinase |
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| Protein accession | YP_001094738 |
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| Protein GI | 127513541 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only
[T] Signal transduction mechanisms |
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| COG ID | [COG0591] Na+/proline symporter
[COG0642] Signal transduction histidine kinase
[COG0784] FOG: CheY-like receiver |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCCCAA ACTGGCTATT GGTTGCCATC AGCATCAGCT ATATCGGCCT GCTGTTTTTA
ATGGCATTTC TGGGTGACAA GTACCGCGGC AAGTGGTTTG CCGGGCAGCA CACCATCATC
TACTCCTTGT CGCTGGGGGT CTACTGTACC TCCTGGGGCT TTCTCGGCAC CGCCGGACAG
GCTGCCAATA ACTCCTTCGC CTATCTGCCG GTTTATATCG CGCCTATCTT GCTGTTTATC
TTCGCCTGGC CCTTTATCCA GCGGGTGATC CGCGTCTGTC TCAAGCTCAA CATCACCTCG
ATTGCCGATC TGCTGGCGGC CCGTTTCGGC AAGTCGCCCT TGCTGGCGGT GGTAGTCACC
TTCGTCGCCC TGTTCGGCAC CCTGCCCTAT ATCGCGTTGC AGCAGAAGGC GATCGTTAAC
TCCTATGAGA TATTGCGGCA AGATCACCTG CTCTCCTCCT GGCAGCTGGG CCTGGTGGTG
AGCCTGATCC TCGCCGGTTT CACCATAGTG TTCGGGGTAC GCGCCATCGA CGTGACCGAG
CGCCATCCGG GCATGATGCT GGCCATCGCC TTCGAGTCCT TCGTGAAGCT TATCGCCTAC
CTCACCATAG GCATCTTCGT CTCCTTCTTC CTGTTCGACT CGCCTATGGA TATCTGGCGC
CAGGCGACGG AGATCAAGCC CCTAGAGGCG GAGTTTAATT ACCCCAACTT CATCTCGCTG
TTTGGCCTGT TGATTATCGT GATGTCGGCA TTTCTCTGTC TGCCGAGGCA GTTCCAGGTG
TTGATCGTCG AGCTGAAATC ACAGAAGCAT GTGCTCTGGA GCCGCTGGAC CTTCCCCCTC
TATGTGCTAG TGTTTGCCTT CTTCGCCACG CCATTGGGTC AGGCGGGCAA CATCCTCTAT
GGCGACTCGC TACAGAGCGA CGCCTATGTG CTGTTTCTGC CTGTCTTCAG CGGCGATATC
TGGCTGGGGC TGTTTAGTTT TCTCGGCGCC ATCTCGGCGG CCAGCTCTAT GGTGATCATC
TCCACCATCG CCCTGAGTAC CATGCTGAGT AACGAGATCG TCTTCCCGAC CCTATTTAAG
ATCAACAATA TACAGAGCAA TGACTTCCAC AAGTTCCGCT CGCACCTGCT TAATATCCGC
AAGGCGCTGG TACTGCTGGT GATCTTCATG AGCTATGGCA TGTTCCTCAT CGCCCCGCCC
GACACACTGG CCTCTTTAGG TGAGGTAGCC TTCGGCGCCA TCGCCCAGAT AGGCCCTGCG
CTGTTTGCCG CCTTCCTCTG GCGTCGGGTC ACGCTGATCG GCGTATTGGT TGGGATCTCC
AGCGGCTTCG CCCTCTGGCT GGTGCTTAAC CTGTTGCCGC AGCTGGGTCT CTACGGTCAC
CCCTTCGCCG GCAGCGGTTA TTCGATGACG ACGATGGCAA CTCTGGTGGG TCTGTTTGTC
AACGTGATGG CCATCTGGCT AGTCTCCTCC TTTACCCGCC AGAGCGTGCA CGAGCAGATG
CAGATAGGTC ACTTCATCGA GCGGCCCGAG CTCGACAAGG CGCTGCCCGA GGTGCCCAAG
CATGTGAACC CGACCGAGCT TGAGCTACTG GTGGCCCGCT TCGTCGGCAA GGACAAGGCC
GCCCAGGGCT TCTACTCCTT CTTCTCCTGT CAGCCCCAGC CAATTCAGGA CAAGAACGCC
CATAATCAGG CCTTGATCTT CTTTACCGAA AACATGCTCG CCAGCGTCAT GGGCTCAGCC
TCGGCGCGCC TGGTGCTCTC CTGCGCCCTC CATGGCCGCG ACATCGCCAT AGAGGATGTG
GCCCAGCTGG TAGAGGAAGC CTCCAGCCAT CGCAAGGAGT TCAGTCGCAG CGTGCTGCAC
AGCGCCATCG AGAACGCCAG CGAAGGGATC TCTGTGATCG ATAAAGACCT CAACCTGGTG
GCCTGGAACC AGCAATACCT CAGCCTGTTT AACTACCCGG ACGACCTCGT CTACATCGGC
TGCCCGGTGC GCCAGCTGAT CGAGTACAAC CTCAAGTTCG GCAAGGGCTA TATTCCCAAC
TTGGATGAAC AGGTGGAGCG GCGCCTCAAC TTCCTGCGCC AGGGGAGCCG CCACGCCACC
GAGCGCATCC AGCCCGACGG CAAGACGATT CGCATCCAGG GCAATCCCAT ACCCGGCGGC
GGCTTCGTGA TGATCTTCTC CGACATCAGC ATGTACCGTG AGGCGGAGAA ACTGCTGAAA
GAGAAAAACT TAGACTTGGA AGCCAGGGTA TTTGAGCGCA CCAAGCGACT CGAACAGGCC
AACCTGCAGC TGGCCAAGTC CAACGAAGAG CTGGCCGAGG CGCTACAGAA GGTAGAACAG
GCGCACCAGA AAAAGAGTCA GTATCTCAAG GCCTGTAGCC ATGATCTGCT GCAGCCACTG
TCGGCGGCGC GCCTCTTCTC CTCCGCCTTC GTCCAGGGCG GGCAGCTGTC CAACAAACAG
AAGCAGCAGA TAGGCTATAT CGACAACGCC CTGCAGGTGG CCAACGAGCT GCTGCTGGAT
CTCAACGAGG TGTCGCGCAT CGAGGGTGGC ACTGTAGTGC CCGAGATCAC AGAGTTTGCC
CTGCAGGAGG TGCTCGACTC CCTGGTGGAG GAGTTCAGCG CCATGGCCAG CACCACACAG
GCTGAGTTTA AGTGCATCAA GACCAAGCTC TGGGTGCGCA GCGACAAGGT GCTGCTCAGA
CGCATACTGC AGAACCTGAT CAGCAACGCG TTTCGTTACG CCGGCGGCGG CCGTATCCTG
CTGGGTTGTC GCCGCCACGG CGACACCATC GCCATCCAGG TGGTAGACGA TGGCCCTGGG
ATCCCCGCCG ATAAGCAGGC GGTGATCTTC GAGCAGTTTA CCCGTTTGCA GCACTCGGGC
CATGAGGGCG TTAACGGCCT GGGACTGGGG CTGAATATCG CCCAGGGGCT GGCGGAGCTG
ATGCAGCATC GGCTTACCCT GTCATCACAG GTCAATCAGG GCAGTATCTT CAGCCTGAGC
CTAAGTGTCG CCCAACCAAA ACTTGTGGAG GAGCAGACCA GCCAGCCGGA TATCCTTACA
CTCAACGGCG TCAAGGTGCT GTGCGTCGAT GACGACCCCA ATGTGTTGGC GGGCATGGAG
GAGCTATTGA AGGGCTGGAA GTGTCTGGTG CATACCGCCT CCTCGGCGCA GCAAGCCAAG
GCCTGTGTCA GCCAGTTTGC CGGTAAGATA GACATAGTGC TGATGGACTA TCAGCTGGAT
AACAACCTGA ACGGCCTGGA TCTCATGGCC GAGCTACAGG CCCTCTCCAG CCGCCCCATT
CCGGCGATTC TGATCACCGC CACCATAGAC GAGGAGGTGG TGCAGCGCAC CAAGGAGCTG
GGTTATGGCT ATCTGCGTAA GATCATCAAG CCCATCGCCC TGCGCGCCGT GATGAGCGCT
ACCCTGGCCA ACAGCCTGCA CAACAACTAT TCGGCCCAGC CGAGCCCCCA CTTTAACCTG
GTGGACCCGC TGACCGATTA A
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| Protein sequence | MFPNWLLVAI SISYIGLLFL MAFLGDKYRG KWFAGQHTII YSLSLGVYCT SWGFLGTAGQ
AANNSFAYLP VYIAPILLFI FAWPFIQRVI RVCLKLNITS IADLLAARFG KSPLLAVVVT
FVALFGTLPY IALQQKAIVN SYEILRQDHL LSSWQLGLVV SLILAGFTIV FGVRAIDVTE
RHPGMMLAIA FESFVKLIAY LTIGIFVSFF LFDSPMDIWR QATEIKPLEA EFNYPNFISL
FGLLIIVMSA FLCLPRQFQV LIVELKSQKH VLWSRWTFPL YVLVFAFFAT PLGQAGNILY
GDSLQSDAYV LFLPVFSGDI WLGLFSFLGA ISAASSMVII STIALSTMLS NEIVFPTLFK
INNIQSNDFH KFRSHLLNIR KALVLLVIFM SYGMFLIAPP DTLASLGEVA FGAIAQIGPA
LFAAFLWRRV TLIGVLVGIS SGFALWLVLN LLPQLGLYGH PFAGSGYSMT TMATLVGLFV
NVMAIWLVSS FTRQSVHEQM QIGHFIERPE LDKALPEVPK HVNPTELELL VARFVGKDKA
AQGFYSFFSC QPQPIQDKNA HNQALIFFTE NMLASVMGSA SARLVLSCAL HGRDIAIEDV
AQLVEEASSH RKEFSRSVLH SAIENASEGI SVIDKDLNLV AWNQQYLSLF NYPDDLVYIG
CPVRQLIEYN LKFGKGYIPN LDEQVERRLN FLRQGSRHAT ERIQPDGKTI RIQGNPIPGG
GFVMIFSDIS MYREAEKLLK EKNLDLEARV FERTKRLEQA NLQLAKSNEE LAEALQKVEQ
AHQKKSQYLK ACSHDLLQPL SAARLFSSAF VQGGQLSNKQ KQQIGYIDNA LQVANELLLD
LNEVSRIEGG TVVPEITEFA LQEVLDSLVE EFSAMASTTQ AEFKCIKTKL WVRSDKVLLR
RILQNLISNA FRYAGGGRIL LGCRRHGDTI AIQVVDDGPG IPADKQAVIF EQFTRLQHSG
HEGVNGLGLG LNIAQGLAEL MQHRLTLSSQ VNQGSIFSLS LSVAQPKLVE EQTSQPDILT
LNGVKVLCVD DDPNVLAGME ELLKGWKCLV HTASSAQQAK ACVSQFAGKI DIVLMDYQLD
NNLNGLDLMA ELQALSSRPI PAILITATID EEVVQRTKEL GYGYLRKIIK PIALRAVMSA
TLANSLHNNY SAQPSPHFNL VDPLTD
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