| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2608 |
|---|
| Symbol | |
|---|
| ID | 4920740 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 3074392 |
|---|
| End bp | 3075465 |
|---|
| Gene Length | 1074 bp |
|---|
| Protein Length | 357 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640164202 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_001094733 |
|---|
| Protein GI | 127513536 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTAGTT TAGCGATGCG CCCGTGCGGG GATTTTCGCA CCAGCTATAA GGCTGACAAC
ACGATTTTTG AAACCAAGAC CATACGCCTG GTGACCTGTC TGGTGATCGC GCTGGCCTGC
GCCGCGCCTC TGGTATTGGA TGGTTATTTT CTGACCCTGT TTATTCAGAT CTCATACTTA
GGTATCGCCG CCCTGGGGCT GAATATCCTG GTGGGCTTTA CCGGGCAGAT ATCCCTTGGC
CACGGCGCCT TCTTCGGCTT CGGCGCCTTC GCCTCGGCCT GGCTCAACAC CAGCTTTAAC
ATCCCTGTGG TGTTTTGTAT TCCGCTGGCG GGCTTTCTCA CTATGGGCGT GGGCATGATG
TTTGGCATGC CGGCAGCAAG GATCAAGGGG CTCTATTTGG CCATCGCGAC CCTGGCGGCC
CAGTTCATCA TTCAGGACTT CTTCGGCCGC GCCGAGTGGT TCTCGGGTGG TTCGTCTGGG
GCCATGGCGG CGCCGGTGAG CCTGTTTGGT TTCGATTTCG ACACCGACAT GAGCTTCTAC
TTCATCGCCC TGTTTGCCCT GGTGTTCATG TATATCTGGG GCTGCAACCT GATGCGCAGC
CGCGACGGCC GCGCCTTCGT GGCGGTGCGC GACCACTATC TGTCGGCCGA GATCATGGGG
GTCAAGCTCA ATAAGTATCG TTTGTTGTCC TTCGGCATCT CCTCTTTCTA CGCCGGCATA
GGTGGCGCCC TGTATGCCCA CTACCTGGGG TATGTCTCCT CCGAGGGCTT CACCATCTTA
ATGTCGATTC AGTTCCTGGC CATGGTGATC ATCGGCGGCC TGGGCTCTAT CAAGGGCACC
CTGATGGGCG TGGTCTTCAT GGTGCTGCTG CCTGAGGTGT TAGAGGGCAT GGTGGGACTG
ATGAAGTATA CCGACTACGG CAACCTGCCT ATGGTCACCG ACGGCCTGGC CTACATCAAG
GAGATGGCTA TCGGCCTGGT GATTATCCTG TTCCTCATCT TCGAACCCGA GGGACTGGCC
CATCGCTGGG GACAGATTAA GAACTATTGG AAGTGTTACC CCTTCGCCTA CTAA
|
|---|
| Protein sequence | MSSLAMRPCG DFRTSYKADN TIFETKTIRL VTCLVIALAC AAPLVLDGYF LTLFIQISYL
GIAALGLNIL VGFTGQISLG HGAFFGFGAF ASAWLNTSFN IPVVFCIPLA GFLTMGVGMM
FGMPAARIKG LYLAIATLAA QFIIQDFFGR AEWFSGGSSG AMAAPVSLFG FDFDTDMSFY
FIALFALVFM YIWGCNLMRS RDGRAFVAVR DHYLSAEIMG VKLNKYRLLS FGISSFYAGI
GGALYAHYLG YVSSEGFTIL MSIQFLAMVI IGGLGSIKGT LMGVVFMVLL PEVLEGMVGL
MKYTDYGNLP MVTDGLAYIK EMAIGLVIIL FLIFEPEGLA HRWGQIKNYW KCYPFAY
|
|---|
| |