Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2580 |
Symbol | |
ID | 4921068 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 3041118 |
End bp | 3043151 |
Gene Length | 2034 bp |
Protein Length | 677 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 640164174 |
Product | hypothetical protein |
Protein accession | YP_001094705 |
Protein GI | 127513508 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR03507] decaheme c-type cytochrome, OmcA/MtrC family |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGAAAT TATTCACATC GAAAAGACTC GCCTACCTGG TCGCCGCCGT GCTGACCGGT GCGCTAGTAG GATGCAGTGG AGATGACGGT AAAGATGGTA AAGATGGGGT TGATGGTCAA CCCGGCGCAC CAGGCGAATC TTGGAAACCG CCGGTAGCAA CCAGCTCTCT GGAGAGCTTC GTTAAGGTGA TCGACTACAC CTTGGGCGAA GGCACCATCA GCTTCGAATT CGAACTTACC AATGAAAACG AAGAGCTGGT CAATGGCCTG ATGAACGCCG AAGGTAAAGT CGCCGCACTG ACCGACAAAG GCTTTATCAA CAACCGTAAC GAAAGCCCAA TCAACGAAGT GGAAGACAAT GTCCACATCG GCGGCGCGGT AACCATGAGC ACAGAGGGCG CGACACTGAC CGCTCTGGGT GACGGCCACT ACCGCTTCGA TGCCCCTATG CCTGGGGTCA ACGCCGGTAC CGAAGGGATC GTCTGGCTAC GTGTCGGCGG TAACAGCGAA TCGGGTATCG CTCGCTCCAA TGAGATAGTG GTCAACAAGC CAGAAGGCGC CTTCTCGACC ACCACGGAAG CCTGTTTCTC CTGTCACGTC GACTACTCGA CCAGCCCGAA TCGTCACTCA AGCTATGTGT CTCAAGGCAT GGACGGTGAA GTCACCTTCG TCGAAGGCTG TATGGTCTGT CACGGCTCGG TGAGCCGCAA TGTGGTGAAT GAACAAGGCT TCTCAGTTGG CGGCTACGCC AGAAACACCC TCTCTAAGAT AGGTCACATC AATCACCAGG AATTTGAGAC CGGCTTTAGC GCCTTGAACT GTAGTTCTTG TCACAGCGAG CCAACCGTCA ACGTCAACGT TGCCGGCCCA GGCTGTATCG ACTGTCATGA CACTGGCGGC ATCCCAGGCG ATATCGTTCT CGGCAATGGC TCAGATCTGC GTAAGCTACA CGAAGCCAAG AGCGCCATCA CCTCTAACCA AGCGATCAAG GATAGCTACA AGGTGACGGG TACGGCGCCA GCCTGGTTCC CAGATTCAGG TGCTGCGGGT CAATGGTGTA CCACACTGTC TCTGTTTATG GTCGATGCCG AAGGCAAGGA AACCTTAGTC GACCTACATG AACTGTTTGA TGATACCCAA ACAATTCATA ACCCTGACAA GCCAATTAAC TATGTGGGCT CATACCTGCA CGGTGTGTAT AACGACAGCG TGATTGGCCG TGTTACAGGT GCCTATGATT ACAGCTATGA CGCAGAGGGT CGCAAGACCA TGTGTTTTGC GCAAGATGCT GGCCACGGAA ATCCACATGT CGTCGGCTCA ACGCCGGATC TGACGGCTTG GGCTGATGCA GGCTTGATGG CCTCACTACG TGTCAGCTTC ACCGCCAAAG ACTACATGGG CGCCGAATCT GACGTGGTGA CTATCCACGG CTACACAGAT GTGGCATCAC AAGCCGATGG CGCTGTGACA GCCTACGAGC GTCGTCACAA CGTCGGCAGC GAGTCTTGCA CTACCTGTCA CAACAGCGAA GCCAACTTCC ACAAGAATGG TAACTTCGCC GAAGGTGGTC TGGGCTGTGT GGCCTGTCAC AACAATGGTC AAGATCGCCG CGCCGGCAAC TCTTCACCAG GTTTCGGCCC TATGGTGCAC AGCATGCACT GGGGTGTGGG CAGCAAGAGC CTGGATGAGA ACGGCAAGGA AGTGTCTAAC TCTGCCAGCG TGATCGCGCC GCAGACCGGC TGTGTGGCCT GTCACGACAG CGGTGTGGTT GATCTGAAAG CCGTACCAAA TCAGTTCATC AAAGCACGTG CCTATGGTGT AAGCAACAAG ATGGCCAGCC CAATCACGGC CAACTGTTAC GCCTGCCATA ACGACGACAG CGCGCTGAAC CACATGATGC AAAACGGCGG TACCACCACG GAAGATGTAC CTGCTACCGA GTGGTACAAG CTCAGCACCA CCGAGTCTTG TGCAACCTGT CACGCCGAAG GCAGCAGTTT TGGTATCGAA AACTACCATA ACTTTACCCG CTAA
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Protein sequence | MMKLFTSKRL AYLVAAVLTG ALVGCSGDDG KDGKDGVDGQ PGAPGESWKP PVATSSLESF VKVIDYTLGE GTISFEFELT NENEELVNGL MNAEGKVAAL TDKGFINNRN ESPINEVEDN VHIGGAVTMS TEGATLTALG DGHYRFDAPM PGVNAGTEGI VWLRVGGNSE SGIARSNEIV VNKPEGAFST TTEACFSCHV DYSTSPNRHS SYVSQGMDGE VTFVEGCMVC HGSVSRNVVN EQGFSVGGYA RNTLSKIGHI NHQEFETGFS ALNCSSCHSE PTVNVNVAGP GCIDCHDTGG IPGDIVLGNG SDLRKLHEAK SAITSNQAIK DSYKVTGTAP AWFPDSGAAG QWCTTLSLFM VDAEGKETLV DLHELFDDTQ TIHNPDKPIN YVGSYLHGVY NDSVIGRVTG AYDYSYDAEG RKTMCFAQDA GHGNPHVVGS TPDLTAWADA GLMASLRVSF TAKDYMGAES DVVTIHGYTD VASQADGAVT AYERRHNVGS ESCTTCHNSE ANFHKNGNFA EGGLGCVACH NNGQDRRAGN SSPGFGPMVH SMHWGVGSKS LDENGKEVSN SASVIAPQTG CVACHDSGVV DLKAVPNQFI KARAYGVSNK MASPITANCY ACHNDDSALN HMMQNGGTTT EDVPATEWYK LSTTESCATC HAEGSSFGIE NYHNFTR
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