| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2564 |
|---|
| Symbol | |
|---|
| ID | 4921104 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 3022340 |
|---|
| End bp | 3023152 |
|---|
| Gene Length | 813 bp |
|---|
| Protein Length | 270 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640164158 |
|---|
| Product | MltA-interacting MipA family protein |
|---|
| Protein accession | YP_001094689 |
|---|
| Protein GI | 127513492 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3713] Outer membrane protein V |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.295331 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATTACC TTCCCTTAGC CCTAGTTGCC CTTGGCAGCA TCAATCTGGC CCAGGCCGCC
GAGTCGGACA CCTATATCAG CAATGGTCAG GTCTATCACA GCAGAGGCTG GGTGGTAGAG
TTTGGCGTTG GCTATAACTC AGACATCATC AAAGAACAGA AGAACGACTA CAATTTTGCC
TTCGGCGACC ACAACCGCTT CGGCCCCCGC GTGAATGTGG GCTACCACGG CGATCGCTTC
AACGCGGATC TGGACAAGGG CATCAACTAC CGCCTCTTTG GCAAAGACAG AGATGCCATC
ACCTTCAGCA CCTACCTGAC AGGTAACGGC CTCTGGCTGG ACAAAGATGT GTCTAAGGTG
CTGGCCGGCA TGGAAGATCG TCGTATCAGC GTGGATCTGG GCCTGAACAT GGATATTAAG
GTGGGGCCGC GCGGCGTCCT CTCCACCAAC TTCCAGCACG ATATCAGTGG CGAATATAAG
GGCTATGTGG CGGGTGTGCG CTATCAGCAG ATCCTCAAGC TTGGCCGTCT GGATCTGGTG
CCGTTTGTGG GCGTAAGTTA CAACAGCGCC AAGTTTAACG ATCACTACTT TGGCGTCAGC
AAGAAAATGG CTATGCCTAA GCGTGCGCAG TATGAGGCCA AGGCCGGCGT TAACTATGAC
GTTGGCTATC AGCTGATACT GCCGCTCTCG AGCAATTGGC GCATTACCCA GCAGACCAGC
TACACCCGCC TGAGCAAGGA GATTGCCGAC TCGCCCATTA CCGATTCACG CAATCAGTGG
TCGGCCAACC TGATGGCGAG CTACCGTTTC TAA
|
|---|
| Protein sequence | MNYLPLALVA LGSINLAQAA ESDTYISNGQ VYHSRGWVVE FGVGYNSDII KEQKNDYNFA
FGDHNRFGPR VNVGYHGDRF NADLDKGINY RLFGKDRDAI TFSTYLTGNG LWLDKDVSKV
LAGMEDRRIS VDLGLNMDIK VGPRGVLSTN FQHDISGEYK GYVAGVRYQQ ILKLGRLDLV
PFVGVSYNSA KFNDHYFGVS KKMAMPKRAQ YEAKAGVNYD VGYQLILPLS SNWRITQQTS
YTRLSKEIAD SPITDSRNQW SANLMASYRF
|
|---|
| |