Gene Shew_2511 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2511 
SymbolcysS 
ID4921278 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp2954783 
End bp2956162 
Gene Length1380 bp 
Protein Length459 aa 
Translation table11 
GC content54% 
IMG OID640164105 
Productcysteinyl-tRNA synthetase 
Protein accessionYP_001094636 
Protein GI127513439 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0215] Cysteinyl-tRNA synthetase 
TIGRFAM ID[TIGR00435] cysteinyl-tRNA synthetase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value7.06228e-07 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTGAAGC TATACAACAG TCTTACCCGC CAAAAAGAGG AATTTAAGCC AATACAGCCA 
GGTAAAGTCG GCATGTATGT CTGCGGGGTT ACCATTTATG ATTTGTGTCA TATTGGTCAC
GGACGTACGT TTGTTGCTTT TGACATGATC GTCAGATACC TGAGATATAT CGGCTACGAT
GTGAATTTCC ACCGTAACAT CACAGATGTC GACGATAAGA TCATCAAGCG CGCCACCGAG
AATGGCGAGA GCTGCGATGC CCTCACCGAG CGTCTGACTC AAGAGATGTA TCACGACTTC
GACGCGCTGA ACATGAAACG TCCCGATTTT GAGCCTCGCG CGACTCAGCA CATGCCTGAG
ATCATCGAGA TGGTCGAGCG CCTACTGGAG CGTGACCATG CCTATATCGC CGACAATGGC
GATGTGCTCT TCAGCGTCGC GTCCTTCCCT GAATATGGTC GTCTGTCTGG TCAGAACCTG
GATCAACTTC AGGCCGGTGC CCGCGTAGAA GTGGACGAGA ACAAGCGCGA TCCTATGGAT
TTCGTGCTGT GGAAGATGTC TAAGCCGGGC GAGCCAACTT GGGATTCGCC ATGGGGCCCT
GGTCGTCCAG GCTGGCATAT CGAATGTTCG GCGATGAACA GCAAGCATCT GGGAGAGCAT
TTCGATATTC ACGGCGGCGG TTCAGATCTG CAGTTCCCTC ACCATGAGAA CGAGATCGCT
CAGTCTTGCT GCGCCCACGA CACCCCCTAT GTGAACTACT GGATGCATAC CGGTATGGTG
ATGGTGGACA AGGAGAAGAT GTCTAAGTCG CTCAATAACT TCTTCACCAT TCGTGACGTG
CTCGCGCATT ATGATGCCTC GACCGTGCGT TACTTCCTGC TGTCTGGTCA CTACCGCAGC
CAGCTGAACT ACTCGGAAGA TAACCTAAAG CAGGCTAAGG CGGCGCTCGA GCGTCTCTAC
ACAGCGCTGA AGGGACTGGA TCTGAGCGTC GAGGCTGCGC CAGCAAGCGA GTATGTGGCT
AAGTTTAAAG AGGCTATGGA CGATGACTTC AATACGCCTG AGGCCTACTC AGTGCTGTTT
GACATGGCTC GTGAGATCAA CCGTCTAAAA GTTGATGACC TGGCGGCGGC TTCTGCCCTG
GGCGTTAGCA TGAAGCAGTT GGGTGACGTG TTGGGGATCC TAGAGCAGGA TGTCGATGGC
TTCTTTAAGG GTGAGGGCAG CGACGATGAG GTGGCGCAGA TCGAAGCCTT GATCGCAGAG
CGTAACCGTG CACGCACCGA GAAGGATTGG GCCGCGGCCG ATGTGGCGCG TGATGGTCTT
AATGCCCTTG GGGTGATCCT GGAAGATGGC CCGGAAGGAA CGACCTGGCG TAAGAAGTAA
 
Protein sequence
MLKLYNSLTR QKEEFKPIQP GKVGMYVCGV TIYDLCHIGH GRTFVAFDMI VRYLRYIGYD 
VNFHRNITDV DDKIIKRATE NGESCDALTE RLTQEMYHDF DALNMKRPDF EPRATQHMPE
IIEMVERLLE RDHAYIADNG DVLFSVASFP EYGRLSGQNL DQLQAGARVE VDENKRDPMD
FVLWKMSKPG EPTWDSPWGP GRPGWHIECS AMNSKHLGEH FDIHGGGSDL QFPHHENEIA
QSCCAHDTPY VNYWMHTGMV MVDKEKMSKS LNNFFTIRDV LAHYDASTVR YFLLSGHYRS
QLNYSEDNLK QAKAALERLY TALKGLDLSV EAAPASEYVA KFKEAMDDDF NTPEAYSVLF
DMAREINRLK VDDLAAASAL GVSMKQLGDV LGILEQDVDG FFKGEGSDDE VAQIEALIAE
RNRARTEKDW AAADVARDGL NALGVILEDG PEGTTWRKK