Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2509 |
Symbol | tig |
ID | 4921276 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 2951564 |
End bp | 2952868 |
Gene Length | 1305 bp |
Protein Length | 434 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640164100 |
Product | trigger factor |
Protein accession | YP_001094634 |
Protein GI | 127513437 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0544] FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) |
TIGRFAM ID | [TIGR00115] trigger factor |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00000731467 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.870147 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAGTTT CTGTAGAAAC AACACAAGGT TTAGAGCGCC GCCTAACTAT CTCTGTTCCT GCTGAGCAGA TTGAAAAAGC CGTTTCTGAT AGTTTGAAAA ATGAAGCTAA GCGTGCACGT ATTCCTGGTT TCCGTCCAGG CAAGGTACCT GTAAGCGTGA TCAACAAGCG TTATGGTAAA GCGATTCGTC AAGAGATCAC TGGCGAAGTA ATGCAACGTA ACTTTATCGA AGCCATCATC GCAGAAAAAT TGAACCCAGC CGGTGCACCA ACTTTCGTTC CTGGTGAAAC CGATGCTGAA AACTTCCAGT TTGTTGCTAC CTTCGAAATC TACCCAGAAG TAGAACTAAA AGGCCTAGAT GCGATTGAAG TTGAGCAACC AACTGCCGAA GTTACCGATG CTGACGTTGA TGCAATGATC GAAACGCTGC GCAAGCAACA CGCTACGTTC GAAGCGGTTG AGCGTGAAGC TGCCGAAGGC GACAAGGCGA AGATCGACTT CGTTGGTTCT ATCGACGGTG AAGAGTTCGA AGGCGGCAAG GCCGAAGATT TCGAACTTCA ACTTGGCAGC GGCCGTATGA TCCCAGGTTT CGAGTCTGGT GTTGAAGGTC ACAAAGCCGG TGAAGCATTC GATATCGACG TGACTTTCCC AGAAGACTAC CACGCAGAAA ACCTGAAGGG TAAAGTAGCT AAGTTCGCTA TCACCCTGAA AGAAGTACAA GCGGCTAACC TGCCAGAAGT TAACGATGAG TTCGCTAAGC TGTTCGGCGT TGCCGACGGC GGCCTGGAAG CGCTGAAAGT AGAGATCCGT AAGAACATGA GCCGTGAGCT TGAGCAAGCG CTTAAAGCTA ACGTTAAAGA TCAGGTGCTA AACGGTCTGC TTGAGCAAAA CGAAATCGAA CTGCCTAAGG CACTAATCGA TGGCGAAGTT AATGTTCTGC GTCAGCAAGC TATGCAGCGT TTCGGCAACC AAGCCGCTAA CATGCCTGAG CTACCTGCTG ACCTGTTCAC CGAGCAAGCC GAGCGCCGCG TAAAAGTGGG TCTGCTACTT GGCGAAGTGA TCAAGACTAA CGAGCTGAAA GCTGACGACG AGCGTGTTCA AGCGCTGATC GCTTCTATGG CTTCTGCCTA CGAAGATCCA CAGGAAGTTA TTGAATATTA CAATAACAAC CAAGAGATGA TGCAGAACAT GCGTAACGTT GCGCTAGAAG AGCAAGCTGT TGAAGCACTG CTGAAAACTG CTAAGGTTAC CGAGAAAGCA GTTCAATTCG AAGAATTTAT GAACAAGGCT ACCGGTCGCG CGTAA
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Protein sequence | MQVSVETTQG LERRLTISVP AEQIEKAVSD SLKNEAKRAR IPGFRPGKVP VSVINKRYGK AIRQEITGEV MQRNFIEAII AEKLNPAGAP TFVPGETDAE NFQFVATFEI YPEVELKGLD AIEVEQPTAE VTDADVDAMI ETLRKQHATF EAVEREAAEG DKAKIDFVGS IDGEEFEGGK AEDFELQLGS GRMIPGFESG VEGHKAGEAF DIDVTFPEDY HAENLKGKVA KFAITLKEVQ AANLPEVNDE FAKLFGVADG GLEALKVEIR KNMSRELEQA LKANVKDQVL NGLLEQNEIE LPKALIDGEV NVLRQQAMQR FGNQAANMPE LPADLFTEQA ERRVKVGLLL GEVIKTNELK ADDERVQALI ASMASAYEDP QEVIEYYNNN QEMMQNMRNV ALEEQAVEAL LKTAKVTEKA VQFEEFMNKA TGRA
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