| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2489 |
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| Symbol | |
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| ID | 4920912 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2928413 |
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| End bp | 2928712 |
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| Gene Length | 300 bp |
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| Protein Length | 99 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640164080 |
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| Product | helix-hairpin-helix repeat-containing competence protein ComEA |
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| Protein accession | YP_001094614 |
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| Protein GI | 127513417 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1555] DNA uptake protein and related DNA-binding proteins |
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| TIGRFAM ID | [TIGR00426] competence protein ComEA helix-hairpin-helix repeat region
[TIGR01259] comEA protein |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.632838 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0131987 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAGAACC TACTTTTAGC TGCGTTCGTC GTAGCGTCAT TTTCCCTCTT TCCCGCGCTG
GCTGCCGAAC AGGTTTCAAT ACCTGCCGAC ACGGCCCAGG CGAGCCTAAG CCAGGTTAAT
ATCAATACCG CAAGCGCCCA GGAGCTGACT CAGCTCAAGG GCATTGGTGA AGCTAAGGCG
TCGGCCATAG TCGAGTACCG AGATGCTCAC GGTAAATTCA ACAGCATTGA AGAATTAACC
CAGGTAAAGG GTATCGGCCC TAAGGTGATC GAACAGAACA AGGCGATACT GGCCCTGTAG
|
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| Protein sequence | MKNLLLAAFV VASFSLFPAL AAEQVSIPAD TAQASLSQVN INTASAQELT QLKGIGEAKA
SAIVEYRDAH GKFNSIEELT QVKGIGPKVI EQNKAILAL
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