| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2481 |
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| Symbol | |
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| ID | 4921376 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2918374 |
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| End bp | 2919585 |
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| Gene Length | 1212 bp |
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| Protein Length | 403 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640164071 |
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| Product | porin |
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| Protein accession | YP_001094606 |
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| Protein GI | 127513409 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000211873 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.0000558993 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGAAGA GTGTAATAGC AACAGCGTTA GCGGCTGTCA TTTTTGTCCC CGCTGCATCC
GCTATCGAAA TCTATAAAGA CGATAAAAAT GCGGTAGAAA TTGGTGGTTT TATTGATGCC
CGTGTTATTA ACACTCAAGG TTCAACTGAA GTGGTTAACG GTGCGTCACG GATCAATTTT
GGTTTCACCC GTGAGATGAG CGACGGCTGG AAGGCGTTCA CTAAGCTGGA GTGGGGTGTG
AACCCATTCG GTAACAGCGA AATCGTTTAC AGCAGTGAGA GTAACTTCGA ATCTAAGAGC
GGTGACTTTC TTAACAACCG TCTCGGTTAT GTCGGTATCG CCCACGATCT CTATGGTAGC
CTGACCATAG GTAAGCAGTG GGGTGCTTGG TATGACGTGG TTTACAACAC TAACTACGGC
TTCGTATGGG ACGGTAACGC TGCCGGTGTT TACACCTATA ACAAGGCAGA TGGTGCGGTA
AACGGTGTGG GTCGTGGTGA CAAGATCGTT CAGTACCGTA ACAGCGTAGG CGATCTGAGC
TTTGCGGTTC AGGCGCAGCT AAAGAATGAT AAGTTCTATA CCTGTGAATA TGATCCTAAC
CTGTCTACCG ACTGTAAAGA GCGTTGGGAC AGCCAAGATC CTGTCTTAGA TTCAGAAGAA
GTTAAGTACA ACTACACCTA TGGCGCGTCT GCGACCTATC AGGTTAACGA CAAGCTTTCT
GTCTCTGCTG GTATCAACCG TGGTGAGTTT GATGTCACCT TCAGAAAGAC CTCAGAGCAG
ATCACCGCAA TCGACGTGAT CTACGGTATG GGTGTGACCT GGGGTAACTG GGACGCCGAC
GGTTTCTATG GCGCGGCTAA CTTTAACAAG AACGAGAACC ACGATACCGA TAACCTGGGT
CGTCTGATCA AGGATTCATA CGGTGTCGAA ACACTGTTCT CTTACAAGTT TGATAACGGT
TTCCGTCCCT TTGTTTCTTA CAACATCTTA GACGCGGGTA AGGACTATGT GATCCAGCCT
AACAACGTTG ACCCTAACTC TTCGTTCAAG CGTCAGTTCG TGGTTGTTGG TCTGCACTAT
GTGTGGGATG CCAACACAGT GCTTTATGTT GAAGGTCGTA AAGACTTCAG TAAGTTTGAA
GGTGCCGATG CTGAAGCCCA GGCTAAATTC GAAGAAGACG GTATAGCCAT AGGTATTCGT
TACACTCTGT AA
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| Protein sequence | MKKSVIATAL AAVIFVPAAS AIEIYKDDKN AVEIGGFIDA RVINTQGSTE VVNGASRINF
GFTREMSDGW KAFTKLEWGV NPFGNSEIVY SSESNFESKS GDFLNNRLGY VGIAHDLYGS
LTIGKQWGAW YDVVYNTNYG FVWDGNAAGV YTYNKADGAV NGVGRGDKIV QYRNSVGDLS
FAVQAQLKND KFYTCEYDPN LSTDCKERWD SQDPVLDSEE VKYNYTYGAS ATYQVNDKLS
VSAGINRGEF DVTFRKTSEQ ITAIDVIYGM GVTWGNWDAD GFYGAANFNK NENHDTDNLG
RLIKDSYGVE TLFSYKFDNG FRPFVSYNIL DAGKDYVIQP NNVDPNSSFK RQFVVVGLHY
VWDANTVLYV EGRKDFSKFE GADAEAQAKF EEDGIAIGIR YTL
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