| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2480 |
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| Symbol | |
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| ID | 4921375 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2914896 |
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| End bp | 2917526 |
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| Gene Length | 2631 bp |
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| Protein Length | 876 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640164070 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001094605 |
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| Protein GI | 127513408 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00179427 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.0000950091 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTATAAGA ACAGCTTATT AGCTAATTCA GTGCGTTTCG CACTAGTTGG CGGTGCAGCT
ATGACAGCTT TTACTGCTCC AGCAGTATTC GCGGCAGACG AGCAAGCTGC AGATAAAGTT
GAACGTATTG AAGTTACTGG TTCACGCATT AAGCGTAGTG ATCTTGAAGG TGCTTCACCT
GTAACAACGA TCACTGCAGA CGATATGAAA GTTGAAGGTA ACTTTACAGT AGCCGATGCG
CTACGTAACA GTAACTTAAA CTCTTTTGGT TCATTCTCTG AGCGCTCTGG TAGCTCTGCT
CAGTCTCAAG CAACAATCAA CCTACGTGGT GCTGGTTCAA GCCGTACCCT AGTTCTGATC
GATGGTAAGC GTTTCCCAGG TTCACCTACT CTAGGTGGTT CTTCTGCTAA CCTTAACGCC
ATCCCTATGG CAGCGGTTGA GCGTATTGAA ATTCTAACCG ACGGTGCTTC TTCTACTTAC
GGTTCTGACG CGATTGCTGG TGTTGTTAAC ATCATCATGA AGAAGAACTT CCAAGGTATC
GAATTCAACG TTGGTGGTGG TTCACGTGAC CGTGACGGCG GCCTGACAAG TAAAGAATTC
TCTGTGGTTG CTGGTTATGA AATGGATAAG GGTAACATTA CCTTTGCATT CGACCATCAA
GACCGTAAGG GTATCGCTGA CGGCGACCGT GCTTTCTCAG CTCCTTGGAT GCGTGACCTG
AACGGTGACG GTGAAATCCA GGCTTACAGC GAAACTGATG GCTGGTCTAT CTATGGTGCA
ACCATTGCTT CTCCAGACTT CTCAGAAGCT CAAGCTTCAC CACTTTGTGA TGACTTAGCA
GCACAATACG GCGACAACGT ATTCAAGACT GTTAAAGCTG ACGATGACTG GGGCCCAGGT
TCAACTTACT GTATGTATGC ATACGGTAAC GTTTCTTATA ACAAAGCTTC TGTTGACCGT
AACACTGTTT ATGTAGATGC AAACTATGAA ATCGCGGAAG ATGTAGAGTG GTTCGGTCGC
ATCATGTTCA CTCAGAACAA CTCTTTCGGT CGTTATGCGC CTCCAGCTGC TGCTTGGAAC
AACATGTCTG CCGATAACCC ACATAACCCT TACGGCGAAG AAACTCGTGG TTACTTCCGT
TGGGTTGGTA TCGGTACTCG TGACGGTAAT GTAGATGACT ACAACCAAGA TTACCTGACG
GGCCTTCGTG GTTCTATCAG CGCATGGAAC GATGCGACTT GGGAATTCTA CTACCACTAC
AACAAGGCCG ATAACAAGTC TATCGGTGAG TACTACCTGA GCTACTCTGG TCTTGCTTAC
AACGAAGCTA ACGGAATCGA TCTAGGTTCT GAAGCCGGTG TAAACAACAT GAAGGCCACT
ACTCTGACTC AAGACCGTGC TACCTTCCAC CAGTACAATG CTGGTATCGG TTTCGATGCA
TTTGAACTGC CAGGTGGTGC TGTTGCTCAC TACTTCGGTT TAGAGTACTT CGAGCAAGAT
TTCGCTTCTA TCTATGACGC GCAATCTGAA GCGGGTCTAA TCGGTGGTAG CGCAGGTAAC
TCTGCTGGCG GTGACCGTCA AGTATGGGCT GCATTCTATG AAGCGGCTAT GCCTCTAACT
GACACCATCG AACTGAACAT CGCAGCTCGT TACGATGATT ACAGCGATTT CGGTAACAAC
GTAGCGCCTA AGGCATCTGT TCGTTGGCAA GCTCTGGATA ACTTGGTTCT ACGTGCTTCT
TACTCTGAAG CGTTCCGTGC ACCAGCTCTG GATCAGCTAT ATGCTGCAAC CACTTTCAGT
GCTGATGACG GTACCGACTA CCCATACTGT GTATCTAACG GCATTGCTGA TTGTCCTGAG
AAGCAATACG ATACATACAT CCGTGCTAAC AAGGACCTAG GCCCTGAGAC TTCAGAGTAC
ATCAACTTAG GTCTTGCATG GGATATCGTA GATAACTTCG GTATTAAGGT TGACTACTTC
GACCTGAAGA TCGATGACGT TATCAGCCGT CGCTCTATCA CTAACGTAAT GCGCGGCATT
GCAAGTGGTA ACCTGGCTCC ATCTGATACC TTCTACGTAG TTCGTGCTCC AGGTGAAGCA
GGTAAACTAG GTAAGGCATT AGAAGTTGGT ACTGGTTATG GCAACAGCGA TAAGCTACAG
ATCAAAGGTA TCGACGTTGG TCTAAACGGT AACTTTGAAA CTGACTTCGG TGACTTCGGT
ATCGCATGGA CTAACAGCTT CGTTCTTGAG TATGTTGAAG AAGTTGAAGG TGGTTCAGGT
GCAATCGACA CTGCTGGTTG GTCAGGACAG CCTGAGTACA AGTCTGTATT TACTACTACT
TATACAATGG GTGACCACCG CGTATCTTGG AACATGAACT ACACTGACAG CACTTACGAG
TCAAGCAAGT CAGTTGGTGA CACTATTGTT CCAGAAGGTA GCTTAGATTC ATGGTTGATC
CACAACATCA GCTACACCTA TGATGCAGGT TCTTTCGGTG CAATTATGCT AGGTGTTAAC
AACCTCACTG ACGAAGATCC TGTTCTATCT TCAGACGGTA AGTTCGAAAA CGCTGACCTG
TACAACAACT ATGGCCGCGA ATACCGCGCA AGCTACACTC TGAAGTTCTA A
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| Protein sequence | MYKNSLLANS VRFALVGGAA MTAFTAPAVF AADEQAADKV ERIEVTGSRI KRSDLEGASP
VTTITADDMK VEGNFTVADA LRNSNLNSFG SFSERSGSSA QSQATINLRG AGSSRTLVLI
DGKRFPGSPT LGGSSANLNA IPMAAVERIE ILTDGASSTY GSDAIAGVVN IIMKKNFQGI
EFNVGGGSRD RDGGLTSKEF SVVAGYEMDK GNITFAFDHQ DRKGIADGDR AFSAPWMRDL
NGDGEIQAYS ETDGWSIYGA TIASPDFSEA QASPLCDDLA AQYGDNVFKT VKADDDWGPG
STYCMYAYGN VSYNKASVDR NTVYVDANYE IAEDVEWFGR IMFTQNNSFG RYAPPAAAWN
NMSADNPHNP YGEETRGYFR WVGIGTRDGN VDDYNQDYLT GLRGSISAWN DATWEFYYHY
NKADNKSIGE YYLSYSGLAY NEANGIDLGS EAGVNNMKAT TLTQDRATFH QYNAGIGFDA
FELPGGAVAH YFGLEYFEQD FASIYDAQSE AGLIGGSAGN SAGGDRQVWA AFYEAAMPLT
DTIELNIAAR YDDYSDFGNN VAPKASVRWQ ALDNLVLRAS YSEAFRAPAL DQLYAATTFS
ADDGTDYPYC VSNGIADCPE KQYDTYIRAN KDLGPETSEY INLGLAWDIV DNFGIKVDYF
DLKIDDVISR RSITNVMRGI ASGNLAPSDT FYVVRAPGEA GKLGKALEVG TGYGNSDKLQ
IKGIDVGLNG NFETDFGDFG IAWTNSFVLE YVEEVEGGSG AIDTAGWSGQ PEYKSVFTTT
YTMGDHRVSW NMNYTDSTYE SSKSVGDTIV PEGSLDSWLI HNISYTYDAG SFGAIMLGVN
NLTDEDPVLS SDGKFENADL YNNYGREYRA SYTLKF
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