| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2421 |
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| Symbol | |
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| ID | 4921751 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2843433 |
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| End bp | 2847746 |
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| Gene Length | 4314 bp |
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| Protein Length | 1437 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 640164011 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001094546 |
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| Protein GI | 127513349 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.261308 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATTATT GGCTAATAAT CAAACTAATA ATTATGCCTA AAATCCTCTC AAGATTGCTA
CTCTCACTGC TAATGGCCCT GACTGTCTCC AGCTATGTCT CCGCTAGTGA AATACCAAGC
AACGCGCCGA TCTTAAAGGT CGATCACTAT AACGTTCCCG AAGGCTTATC GCAGAGTACT
GTCACCTCCA TCGTCGAAGA TGAGCATGGT TATATATGGA TTGGTACGTT AAATGGCCTT
AATCGCTTTG ATGGCACCCA ATTTAAACAA TATTTTGCCG AAGGGGTAGA TGGGTCATTA
CCAAGTTCAT TCATTAGAAG CCTGTATATA GACGATAGTA GTAGATTACT AGTTGGTACA
GACAAAGGGT TAGTCATCTA CAATGATGAT TTAGACAATT TTGAAAGCTT TGAAAACCAA
CTAATAAAAG AGCAAGCAAT CTGGTCTATT AGTGAAGATA AAAAATCAAT TTTGATTGGA
ACAGAAAGTA ACTTAATTGA AATAAACAAA TCAGAAAACA AAGTTCAACT GCTAACAAAT
TATGATTTTG GCGGTATAAA AAAGACTATT TCACTCAACG ACAAAATATA CCTTAGAAAT
TATGATGGTG AAATCTATGA GTACACCAAA GGAAGGGTTA ACTTAGTCAC TAAAAATTCA
ATAGGGTTAC TTTTATTTAA AAACAGTATT TTCACCCTAC AAAAATACAA CCTCGTCAAT
ATATTAACAA AAGAAAAAGT ACTATTCCCA AGCGAAATCA CGAGCATTTC AGAAAACAAC
TCAACTCCGG TAATCTTAAC AGATAATCTA ATTACGACTA TTGATAACAA CCTAAAAGTA
GAGGTAATAG GAACATTAAA AACTGACTCA GCGACAACTT ACCCACCGCT AGTTTATTCA
AGTAATAAAG GGATCTACAT TGCAACAATA AACAACGGGA TAACGATCAT AAAACATGAT
AGAAACCTAA TAAAGAACTA CATATCAAAC AAAAATGTAT GGTCAATTGA CAGCTATAAT
AAAGAGAAAT TGATTGTCGC TTCAGACTCA CCTTTAATAG AAGTATTTGA TAAGAACTTA
ACATTAATTA ATAGTTATGA CTCGAAAATT GCAGGTCCAA AGTCTGCGAT AATAAAGAAC
AATAAGATAT ACATTGCTTC CACCGAAGGG CTACAATCAA TAGACATCTC AAGCAGAGAG
CATAAAGTTC TGAGCAACAA TAGATTTTTG ATTGTTAGAA GTGATAAGGA TAAGAATAGA
ATTATCACTG GCTCATTTGA TGGTAAAGTA TTTTTTTATA GCCTAGATGA CGAAATTACA
ACGCCAGTCA CTATTGATAG TGGCAATCCG ATATATGATA TAAAAATAAA AAAAGACACT
ACTTGGGTGG CAACTCAGAG CGGTTTATTT TCATTGAATT CTGGCGTGGT CTCTAAAGTC
GTTGCCGCCG ACCTAGTTAG TAGCATTTTT ATAGATGAGA ACACAGTATA CTTTACAACT
CGAAATTCAC TTTCAAAATA TGACACTTTA ACAAATCTCG TAACAGAAAT ATTTAAAAGT
AGCAAGCCTA TTTATGCCAT TGAAAAATCA GGTGACAACA TAATAGCTTC TTCAAATGCT
GAAATCTTTT TGATCACAAA CGATCACGAT ATGTACTCAT TCCCTTCATC TTATGGTAGC
CAAGATGAAT ATAACTCTCA GGCCATCTCC AGCTTAGACG AAACAATTTA CATAGGTGGT
ATAAATGGAT TAAGCGTTTT AAATACAAGA AAAATTTCTA ACTTCTTAAC AGAAAGAATA
CCTCCAAAAG TAATTGTGGA CACCTTGTTA GTTTTTAATG TACCAGAAAA AGTAAACGGT
GGCATATTAA AGAAACAACT ACCTAAGACC CAGAGGATAA GTCTAAAGTA TTCTGATTAT
CCATTTACAC TGAAATTTAG TACCCCAGGA AACATAGATA AAACATTAGA ATATGCCTAT
CAGTTGGAGG GACTTTCAGA TACATGGATA AACTCTAAAG GCATTAACTC CGCGACTTAC
ACTAATTTAT CACCAGGTGA ATACTATTTT AAGGTACACA CCATAGACCC CTTAACAAAA
AAATTAGGTA TTACACAAAG TCTTTCAATT GAAATCACCC CTCCTTGGTG GTTATCGATT
CAAGCTAAAG TCGTCTACCT GCTTATTACC CTCTTGATCA CGGGCGTCAT AGTCAAGGCA
GCGCTTAGAA GAAGAGAGGT ACAGCGTCAG ATCGCTAAGT CTGAAGAACG GTTGAAACTC
TCCCTGTGGG GGAGTGGTGA TGAGATGTGG GACTGGGATA TTGAAACAGG TCAAATCTAC
CGCTCTAACA TCTGGGGGTC CCTCGAGTTT CCACGGGATG GTCAGCGCTC CGGTGAGGAA
GGTGAAGAGA GTAACATTCA CCCTATGGAT CAAGAACGTG TTAACACGGC GCTGAATAAA
CACTTCTACG GTGAAACCGA TCACTTCGAG GCAGCCTATC GCGTTAAGGG CAAAGATGAC
CAGTGGATCT GGATCTTGGA CAGGGCAAAG ATCGTTGAAC GCGATGAAGA AGATAAAGCC
CTGCGTATGA CAGGTACAAT CAAAAACATC AGCAACTTTA AGCAAGCCGA GGAGCAGCTA
AGACTGTTCG AACGCGCCAT CGAGAACATC TCAGAAGGCA TGTTCATCCT GGACAACAAA
TTTAAGTTTG TTGAAGTCAA CGAAGCCTGC TGCGATCTGT GTGAGAAGAG TCGTAATGAC
TTTATTGGCG AGCTGTTTAA GTTTGACCTT TATCCCGAGA GCTACTCAGA GCAGATTCGC
CATATTCTGC AGCAACAAGG TAGCTGGAGT AACGAAGTTG AGTCCGCCAA GGGCGACGGC
AGCAGCTTCC TGATGGAGCT AACCGTCGAT GCGATTTACG ATGAACAAGG TGTCCTCTCC
CACTATGTAG GGGTGTTCTC TGATATCTCC CGTCGTAAGC AACAGGAAGA AGAGTTACGC
AAACTAACCA ACAACGATCT ACTCACCAGC CTGCCAAACC GCTCTAGCCT CATGGTCACC
CTAGGTAACT TGGTGAAGAA AGATACCCAT CACACCCTGA TGGTTTTGGA CTTAGATAAC
TTTAAGAAGA TCAATGACTC ACTTGGGCAT CAGGTGGGTG ATGAGCTATT AATCAAAGTA
GCGAGACGCA TCGAATCCAC GGTGCCTTAC CATACGAGTA TCTATCGTCT GGGCGGCGAT
GAGTTCGCCA TACTGGTCGA TAACAATCCA GATATTGGCT CCAGTGCCGT CATCGCCAAT
CATGTAGTCG ATGCCTTCTC AAGCCCATTC GAGCTCACCA AAGACAGAGT CGTTGTCGGG
GTGAGTATAG GCATAGTGCT CTACCCAGAA GACGATCAGA ATGAACAGGC GCTTCTGCGT
AAGGCAGACA TTGCCATGTA TCACGCAAAA TCTGCCGGTG GCAATCGTTA TCAATTCTAT
TCGGAATCAC TCAATCGCAA TGCCATTCGC CAGCTGGAAG TGGAGAACCT TATCCGCGAA
GGTTTAAGGG ACGATCTCTT CGAAGTCTAC TATCAACCTA AAATTGACCT CAGAACCAGT
AAGATGGCCG GTATGGAGGC CCTGGTAAGA TTAAATCATC CTGAACACGG TCTCATTCCG
CCGGGCGACT TTATCCCACT GGCCGAAGAG AATGGACTCA TCGTCGAAAT TGGCGAGGTC
GTTCTACGTA AAGCCTGCTT CGCGGCACAA AATTGGCGTC GTCAAAATTT GTTCAACGGT
CGGGTCGCTG TCAATTTATC ATCACAACAA TTCGCTCTTC CGGACCTACA ACAACGGATA
GAGTCAATTT TACGTCTAAC TCAACTGCCC GCAGCCAACC TTGAGCTTGA AATTACCGAA
GGCACCGTCA TAAAACAGCC AGAAAAAGCG ATAAAGGTGA TGATGCAACT CTCTAAGATG
GGCGTCAGCC TTGCGTTAGA CGACTTTGGC ACCGGATATT CGTCACTGTC ATATTTAAAG
CGCTTCCCAA TTGACACCCT AAAAATCGAT AAGGCTTTTG TTGACGACAT AGATAAATCT
GACAGAGATC TAAAGATGGT CGACTCTATT ATCACTATTG CCCATAACAT GGGCCTATCT
GTGGTCGGTG AAGGCGTCGA GGAAGCCTCT CAGCTTAGCA TCTTGAAAGC ATTGAAATGC
GAAGAAATAC AAGGATTTAT TTACAGCAAG GCAGTAAATG AAACCAGCTT CACCGAGCTA
CTAAAACAGG AGAGTTTTAC CTACACACCT GTCTCACAAC ACAAGAAAGC CTAG
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| Protein sequence | MHYWLIIKLI IMPKILSRLL LSLLMALTVS SYVSASEIPS NAPILKVDHY NVPEGLSQST
VTSIVEDEHG YIWIGTLNGL NRFDGTQFKQ YFAEGVDGSL PSSFIRSLYI DDSSRLLVGT
DKGLVIYNDD LDNFESFENQ LIKEQAIWSI SEDKKSILIG TESNLIEINK SENKVQLLTN
YDFGGIKKTI SLNDKIYLRN YDGEIYEYTK GRVNLVTKNS IGLLLFKNSI FTLQKYNLVN
ILTKEKVLFP SEITSISENN STPVILTDNL ITTIDNNLKV EVIGTLKTDS ATTYPPLVYS
SNKGIYIATI NNGITIIKHD RNLIKNYISN KNVWSIDSYN KEKLIVASDS PLIEVFDKNL
TLINSYDSKI AGPKSAIIKN NKIYIASTEG LQSIDISSRE HKVLSNNRFL IVRSDKDKNR
IITGSFDGKV FFYSLDDEIT TPVTIDSGNP IYDIKIKKDT TWVATQSGLF SLNSGVVSKV
VAADLVSSIF IDENTVYFTT RNSLSKYDTL TNLVTEIFKS SKPIYAIEKS GDNIIASSNA
EIFLITNDHD MYSFPSSYGS QDEYNSQAIS SLDETIYIGG INGLSVLNTR KISNFLTERI
PPKVIVDTLL VFNVPEKVNG GILKKQLPKT QRISLKYSDY PFTLKFSTPG NIDKTLEYAY
QLEGLSDTWI NSKGINSATY TNLSPGEYYF KVHTIDPLTK KLGITQSLSI EITPPWWLSI
QAKVVYLLIT LLITGVIVKA ALRRREVQRQ IAKSEERLKL SLWGSGDEMW DWDIETGQIY
RSNIWGSLEF PRDGQRSGEE GEESNIHPMD QERVNTALNK HFYGETDHFE AAYRVKGKDD
QWIWILDRAK IVERDEEDKA LRMTGTIKNI SNFKQAEEQL RLFERAIENI SEGMFILDNK
FKFVEVNEAC CDLCEKSRND FIGELFKFDL YPESYSEQIR HILQQQGSWS NEVESAKGDG
SSFLMELTVD AIYDEQGVLS HYVGVFSDIS RRKQQEEELR KLTNNDLLTS LPNRSSLMVT
LGNLVKKDTH HTLMVLDLDN FKKINDSLGH QVGDELLIKV ARRIESTVPY HTSIYRLGGD
EFAILVDNNP DIGSSAVIAN HVVDAFSSPF ELTKDRVVVG VSIGIVLYPE DDQNEQALLR
KADIAMYHAK SAGGNRYQFY SESLNRNAIR QLEVENLIRE GLRDDLFEVY YQPKIDLRTS
KMAGMEALVR LNHPEHGLIP PGDFIPLAEE NGLIVEIGEV VLRKACFAAQ NWRRQNLFNG
RVAVNLSSQQ FALPDLQQRI ESILRLTQLP AANLELEITE GTVIKQPEKA IKVMMQLSKM
GVSLALDDFG TGYSSLSYLK RFPIDTLKID KAFVDDIDKS DRDLKMVDSI ITIAHNMGLS
VVGEGVEEAS QLSILKALKC EEIQGFIYSK AVNETSFTEL LKQESFTYTP VSQHKKA
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