| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2385 |
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| Symbol | |
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| ID | 4921449 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2792231 |
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| End bp | 2794918 |
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| Gene Length | 2688 bp |
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| Protein Length | 895 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640163975 |
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| Product | TonB-dependent receptor, plug |
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| Protein accession | YP_001094510 |
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| Protein GI | 127513313 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000246068 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00510046 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAGCCTA ATTCTATATT GGCTAAAGCT GTTCGTTTCG CATTAATTGG TGGTGCCGCG
ACGGCAGCAC TAAGCGTACC TGCCGTTTAT TCGGCGGACG AAGACAGCGT AGAACGTATT
CAAGTAACAG GTTCACGTAT TAAGCGTACC GATATGGAAA CGGCTACACC TGTTACCGTC
ATGAGCGCAG AAGACATGGC GAAACAGGGT TTCACTAACG TTCAAGATGC GTTGGAAAGC
CTAACTTCAA CCACCAGTGC AATGACCACC CAGTCAGTTC ATGGTTTCAC ACCAGCCGCC
TCATCTATCA GTCTACGTGG CGCCGGTGCT AACCGTACTT TGACACTGAT CAATGGTAAG
CGTCTAAACC AATATCCAAA GCCATCTGGT GGTACCGATA ACTTCGTAGA TACTGCTAAC
CTACCTATGG AAGCGGTACA ACGTATCGAA GTACTGCAAT CTGGTGGTTC TGCTATTTAC
GGTGCTGACG CCGTTGGTGG TGTGATCAAC ATCATCCTGA AAAAAGACTT CGAAGGTGTA
GCACTTAAGT ACCGTCACGG TGACACCACA AACGGTGGCG GCGGAAGTGA CCGTATCGCG
CTTTCTCTAG GTGCTTCATC TGATCGCGGT AACGTATCGA CTTTCATCGA ATTTACCGAT
AACGAGCAGC TAAAAGCGAC TGATCGTGAA AACTTCGGTC TACACACTGA CAAAGTACCA
TACAGCGAAT TTTCTGCTTA CAGCTCATAC GGTGCTCGCA TCGTAGGTTC TGGTACTGGC
GCACGTCAAC TGACTGAAGA AGAATGTACC GCTGGCGGTT ACCTGTGGAC TGGCTCTCTG
TGTGGTTTCG ACCGTTCAGA ATGGCGCGAC CTACAACCTA AGAGCTCACG TTTCATCAGC
TCAACCAACT TCAACTATGA GCTGGCCGAT GACATTAGCT TCGTAGGTCG TTTAGATTTC
GCCGAAGCGA AATCTACCAC TAACATCGAG CCTATGGCGA TCAATGACTA CGACATCAAA
GTCGCAGGCA ACAGCGTCAC CGTAAGCAAT GGCGATCTAA GCAAGACTTT CAACGACAAG
ACTACTGCCC TAGGCGGTGA CTTCGCCAAC GCAACCGATG GTGATTACAA CTACCTACGT
CGTCTACACG AGTTCAGCAA CCGTGCTGGC GAGACTAAGA CGCGTAACTA CTTCTTCACC
GCTGGTCTGG AAGGCACACT GGCTGATGAA TACAGCTGGG ATGCATCAGT TAACTACGGC
CGTACTAACG TAGACGTGTT CCGCAGTGGC TATGCTACTG TTGGCGGCAT GTTCGACTAC
ATCACTGCCG GTGAAAACGG CAACTCTCTG CTGAAGAACA TGAGCGCAGA AGATGTAGAA
CAAGCCTCTT ACTCACCATT TGAGAAGGCT CAGTCTACTC AGAAGAACAT CCAGGCTAAC
ATCTCTGGTA TGGCGTTCGA AATGCCAGCG GGTGACGCTC AGTTTGCATT CGGTGCTGAG
TACACAGAGC AAGACTATGA AACCAACACA GATTCAGAGT CTAAGAAAGG TAACATCCTT
ACCACTGGTG GTTCTTCAGG TGCCGGTGAG CGTTCTTTCT GGGCAACTTA TGCCGAATTG
AGCCTACCTG TTCTTGACGT ACTGACTGTC GACGCGGCAC TACGTTATGA CCGCTACGAT
GATTTCGGTG GCAACCTGTC TCCACAGTTG ACTATTGAAT ACCGTCCACT AAGCGAACTA
TTGGTTCGTG GTTCTATCAG CTCAGTATTC CGCGCACCAG ACATGCATCG TGTATATGGT
GATGCGACTA AGGGCTTCTC TACTGTTATC GATTTCAAAC AGTGTCAAGC ACTTGGTGGT
ATTCCAGGTC AGGGCTACCC AGGCGATGAA ACACTGAATG CTGTTTGTAA GGAACTTCAC
GTAGACACTA CAACAGGTGC TAACAAAGAT CTGGAAGCCG AAACTGGTTA CACAGCTAAC
ATAGGCGCGG TATGGGGCGG TGATGCACTC AACGCATCAT TCGACCTATG GGAATGGAAA
CTGGATGACA TGGTTAGCGA CATCAGCGCT AGCAAGGCTG CTCGTGAATA CGAACAGTAC
GAAAGCATGC TGACTCGTGA TGCAAGCGGC ACTATCACTC ACGTGAACGC CGTTGCACAG
AACCTGGCAT TCCAAAAAGT ACGTGGTTTA GATATCACTG CTGGTTATAG CTGGGATCTG
GACAACATTG GTGAGCTGAA GCTTAACTTC ACCGGTACTT ACATCCTGTT GTCTGAGTAC
CAACTGTCAC CAACTGATCC AGTTGAAGAC GATCTAGAAA ACGGTGGTCT GCCACAGTAC
CGTGCAAACG TTGTACTGGG TTACTACATC GATGACTTCG AAGCGACCTT AGGTGCTTAC
CACACTGCGC GTATGCACGG TGTTCAATAC AAGACGTTCA AGCAATCTGC TATCGACAAC
AACGAAGCAT TCGACGAAAG CGCACACGAA GTGGCATCAC AAACTAAGTG GAACCTGACT
GCAGGTTACA ACATCACTGA TGCTATCAAG GTGAAAGCTG GCGTAGTTAA CCTGTTCGAT
GCAGGTCCTA ACTTTGACCC AACCGATACT TCTTGGCCGC ACTACCCACG TTCAGTGTAC
AACGCACGTG GTCGTGAGTG GTTCCTAGAA GGTGAAGTGA AGTTCTAA
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| Protein sequence | MQPNSILAKA VRFALIGGAA TAALSVPAVY SADEDSVERI QVTGSRIKRT DMETATPVTV
MSAEDMAKQG FTNVQDALES LTSTTSAMTT QSVHGFTPAA SSISLRGAGA NRTLTLINGK
RLNQYPKPSG GTDNFVDTAN LPMEAVQRIE VLQSGGSAIY GADAVGGVIN IILKKDFEGV
ALKYRHGDTT NGGGGSDRIA LSLGASSDRG NVSTFIEFTD NEQLKATDRE NFGLHTDKVP
YSEFSAYSSY GARIVGSGTG ARQLTEEECT AGGYLWTGSL CGFDRSEWRD LQPKSSRFIS
STNFNYELAD DISFVGRLDF AEAKSTTNIE PMAINDYDIK VAGNSVTVSN GDLSKTFNDK
TTALGGDFAN ATDGDYNYLR RLHEFSNRAG ETKTRNYFFT AGLEGTLADE YSWDASVNYG
RTNVDVFRSG YATVGGMFDY ITAGENGNSL LKNMSAEDVE QASYSPFEKA QSTQKNIQAN
ISGMAFEMPA GDAQFAFGAE YTEQDYETNT DSESKKGNIL TTGGSSGAGE RSFWATYAEL
SLPVLDVLTV DAALRYDRYD DFGGNLSPQL TIEYRPLSEL LVRGSISSVF RAPDMHRVYG
DATKGFSTVI DFKQCQALGG IPGQGYPGDE TLNAVCKELH VDTTTGANKD LEAETGYTAN
IGAVWGGDAL NASFDLWEWK LDDMVSDISA SKAAREYEQY ESMLTRDASG TITHVNAVAQ
NLAFQKVRGL DITAGYSWDL DNIGELKLNF TGTYILLSEY QLSPTDPVED DLENGGLPQY
RANVVLGYYI DDFEATLGAY HTARMHGVQY KTFKQSAIDN NEAFDESAHE VASQTKWNLT
AGYNITDAIK VKAGVVNLFD AGPNFDPTDT SWPHYPRSVY NARGREWFLE GEVKF
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