Gene Shew_2380 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2380 
Symbol 
ID4921444 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp2785909 
End bp2786682 
Gene Length774 bp 
Protein Length257 aa 
Translation table11 
GC content54% 
IMG OID640163970 
Productputative sulfate transport protein CysZ 
Protein accessionYP_001094505 
Protein GI127513308 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2981] Uncharacterized protein involved in cysteine biosynthesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0944134 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000158699 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAATCAAA AAGCAAGCAA GCCCGCTAAG AGTGGCGTGA ACTATTTTCT CGACGGCTTT 
CGGCTGATCA AACAACCGGG GCTGAGACGC TTCGTCTTCA TCCCGCTGAG CGTCAACCTG
GTGCTGTTTG CGGCGGTGAT CTACTTCGCC ATCGGCCAGC TGGAGCAGGT GTTTCAATGG
ATCAATGGTC AACTGCCAGA GTACCTGAGC TGGCTGAACT TCCTGCTCTG GCCGCTGGCG
GTGCTCACCC TCTTGGTGGT GCTCTCCTTT ATCTTCAGCT CCGTCATGAA CTGGATAGCC
GCCCCCTTCA ACGGCCTGCT GGCGGAGAAG GTTGAGCAGT ATCTCACCGG CAAAGACCTC
AATACCGGCG GCACCATAGA TTTGATTAAA GATCTGCCAC GCATCCTGGG GCGCGAGTGG
ATAAAACTGA AATATTACCT GCCCAGAGCC ATATTGTTTC TCATCCTCTT CTGGGTGCCT
TTTATCGGCC AGACCGCCGC GCCTGTGCTC TGGTTCCTGT TTAGCGCCTG GATGATGGCG
ATCCAATACT GTGACTATCC CTTCGATAAC CACAAGGTGC CTTTTAATGA TATGAAGTTT
GCCCTCAATC AGACCAAGGG CAGCAGCTTT AGCTTCGGCG CAGCGGTGAC CCTGTTTTCG
ATGATCCCCA TTATCAACTT TATCGTGATG CCGGTCGCCA TCTGTGGCGC CACCTCTATG
TGGGTCGACA AATACCGCGC CGCCTATCGC AATGAGCAGA TTGCGCCTGA ATAA
 
Protein sequence
MNQKASKPAK SGVNYFLDGF RLIKQPGLRR FVFIPLSVNL VLFAAVIYFA IGQLEQVFQW 
INGQLPEYLS WLNFLLWPLA VLTLLVVLSF IFSSVMNWIA APFNGLLAEK VEQYLTGKDL
NTGGTIDLIK DLPRILGREW IKLKYYLPRA ILFLILFWVP FIGQTAAPVL WFLFSAWMMA
IQYCDYPFDN HKVPFNDMKF ALNQTKGSSF SFGAAVTLFS MIPIINFIVM PVAICGATSM
WVDKYRAAYR NEQIAPE